Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal1g1837 | ATGGTTAGATCATGTTGGAAACCAAATATAGAGGAAGGTGTGAGAGGGAAAGTTGATGGGCTGCTATGGTATAAAGATTTAGGGAACCATCTTCATGGAGAATTTTCAATGGCTGTGGTTCAAGCCAATAACTCATTGGAGGATAGGAGTCAAGTTGAATCTGGACCGTTGAGTTCTGAGCATTTGGGTCCTCAAGGGACATTTATTGGTGTATATGATGGTCATGGTGGAACTGCAGCTTCACAGTTTGTCAGTGACAATCTTTTCAGCAATTTCAAGAGTTTTGCAGCTGAACATCAAGGCATTTCAGAAAATGTTATCAGAAGGGCCTTTATGGCAACAGAGGAGGGTTTCCTTTCTGTTGTGAAGAAACAGTGGCTAAGCAAGCCACAGATTGCATCAACAGGTTCATGTTGTTTGGCAGGGATAATTTGCAATGGCATGCTATATATTGCAAATGCAGGTGACTCAAGAGCTGTTTTAGGAAGAGCAGAGAGAGCAACAAGAGTAACAACTGCTATTCAATTATCACCAGAGCACAATGTTAGCATTGAAACTGAGAGAGATTATCTTAGATCAAAGCATCCCTATGATTCACAGATTGTGGTTATGAAACACAAAGTCTGGCGTGTGAAAGGCTTCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGCAGAGTTTAACAAAGAGCCTCTACCATACCAGTTTAGACTAAGTGAACCATTCTTCAAGCCAATTCTTAGTTGTGAGCCATCAATATCAATGCATAAACTCGATCCCAACGATCAGTTTGTCATATTTGCTTCTGATGGTTTATGGGAGCAACTTAGCAGCCAAGCGGCTGTTAACATAGTCAGCAATAACCCACACAATGGAATTGCAAGGAGGCTTGTGAAAGCTGCACTGAGAGAAGCAGCTAAAAAGAGAGAAATAAGATTCACAGACCTCCAAAAGATTGAAGAAGGAGTGAGGAGACACTTCCATGATGATATTACAGTAATTGTTGTATTTATAAATCCCAAACTCATTGATAATAGCTCTCTGGGGATCTCCTCTATCAATCAGAGGAGGTAG | 1086 | 0.407 | MVRSCWKPNIEEGVRGKVDGLLWYKDLGNHLHGEFSMAVVQANNSLEDRSQVESGPLSSEHLGPQGTFIGVYDGHGGTAASQFVSDNLFSNFKSFAAEHQGISENVIRRAFMATEEGFLSVVKKQWLSKPQIASTGSCCLAGIICNGMLYIANAGDSRAVLGRAERATRVTTAIQLSPEHNVSIETERDYLRSKHPYDSQIVVMKHKVWRVKGFIQVSRSIGDAYLKKAEFNKEPLPYQFRLSEPFFKPILSCEPSISMHKLDPNDQFVIFASDGLWEQLSSQAAVNIVSNNPHNGIARRLVKAALREAAKKREIRFTDLQKIEEGVRRHFHDDITVIVVFINPKLIDNSSLGISSINQRR | 361 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal1g1837 | 361 | Gene3D | - | 25 | 351 | IPR036457 | - | |
| Lal1g1837 | 361 | SMART | PP2C_4 | 28 | 340 | IPR001932 | - | |
| Lal1g1837 | 361 | CDD | PP2Cc | 35 | 342 | IPR001932 | - | |
| Lal1g1837 | 361 | ProSitePatterns | PPM-type phosphatase domain signature. | 68 | 76 | IPR000222 | GO:0043169 | |
| Lal1g1837 | 361 | Pfam | Protein phosphatase 2C | 57 | 311 | IPR001932 | - | |
| Lal1g1837 | 361 | PANTHER | ALPHABET, ISOFORM E-RELATED | 3 | 357 | - | - | |
| Lal1g1837 | 361 | PANTHER | SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN | 3 | 357 | - | - | |
| Lal1g1837 | 361 | ProSiteProfiles | PPM-type phosphatase domain profile. | 31 | 342 | IPR001932 | - | |
| Lal1g1837 | 361 | SUPERFAMILY | PP2C-like | 42 | 343 | IPR036457 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal1g1837 | Lal-Chr1 | 20658654 | 20661592 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal1g1837 | 1 | 351 | PP2C-type Phosphatase Gene Family | AT3G12620 | 64.146 | 3.02e-174 | 488 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal1g1837 | K01102 | - | gmx:100815902 | 567 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal1g1837 | 1 | 20658654 | 20661592 | Lal1g1837 | 1 | 20658654 | 20661592 | ECH | |
| Lal1g1837 | 1 | 20658654 | 20661592 | Lal12g0270 | 12 | 1934135 | 1939499 | PCT | |
| Lal1g1837 | 1 | 20658654 | 20661592 | Lal13g1133 | 13 | 8648999 | 8652888 | PCT | |
| Lal1g1837 | 1 | 20658654 | 20661592 | Lal24g0208 | 24 | 1512277 | 1516702 | PCT | |
| Lal12g0270 | 12 | 1934135 | 1939499 | Lal1g1837 | 1 | 20658654 | 20661592 | PCT | |
| Lal13g1133 | 13 | 8648999 | 8652888 | Lal1g1837 | 1 | 20658654 | 20661592 | PCT | |
| Lal24g0208 | 24 | 1512277 | 1516702 | Lal1g1837 | 1 | 20658654 | 20661592 | PCT |