Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1823 ATGAAAATGCTCAAGAGAGAGCTTTTAGCTGAAAAGCTTTTAGTATACCGTGGTTCCACTATACGAACAACACTAATGGAACATAAACACTTTTATAACACAACTTCAATGTTTGAGGGTGAGCCTGACCAGAATTGGAATCATATGCATTCAGATCAAAAGCATGTGCTCCTTGGTATGCCTAGCACTTCAGAGAATGGTTTTTTAATTCATCCTGTGGAAAATATGTCTTCAGATAGTGTTTCTTCTCCCTCTAGTTGGAACTCTACCACAAGGTCAAATGGATATGCAACATCAAGTGTCAATATTGAAGTGCTTCCTCATCAATGGGATGCATCAGACACTTCTAATAATCATTTTATGCATCCGTCTAGTGCTGGAGCTTTCTTTGCAGTGTCTGAAAATTATGCACATCACCCTTCCTCCAATTATGACGGGCAATCATTTCATATTAATGACGGTTTTATTGATCTTACAATGGGAAGTAGAAGAGGGCCTCGCAAGCGTAAGAGCCCTGAAATTCCTTCAGTTTGTGAGAGAGGCAGTACAAGCAGATACTTCAATGCTGGGAGTTCAACTGATCTTTCTATATCTTCAGAAGTACGGCCAGAGAAGCCAAATATAGATTACCAATATATGCCTTGGGATCATGCTACTATGACACCCACATTCAGAGGTGGTGGCCTTTCAATTAGGGGTGAGAGTTCTTTAAGGAACGTGAGGAGTCGTTCTGCACTTGATTTGGAAGCCAACATTGCTAGGACCCATTTATCGAGTAACCATTCGCACAACTCCTACTCTGCTGCCCTCCCAGTTGAGCATTCTAGCATGGTGGACCCTTCAGGCCAGACTTCGAATGCTTTGGCGAGGGATTGGAACCAAATGAATACAAGTGCTTTCAGTCTTGAGGCCAGTCACTTCCTTGTTGGAAGTGGTGCTACTGCCAGTAATGCTTCTTTAGATGTTGGGGCTTATCATCAAGAACAACCTAGTACAATTAGAAACCCTACCGTCCCTCGAAGTGTTCATAATAATCTGACGCAGGCTGTTAGGGGAGTTAGAAGTAATTATTCTCAGAGATCCACTCCAACTTTTAGAGCATCTTCAGGCTTATGTTTGGGATATGTGACACCTTCGGATGATGGATTGCCTGTGGTAGCTGAAAATTACACTTCTAGACATCCAAGGCCTAGACCGTCAACCATCAGCCGCTGTCGGAACAATGATAGAAATGGGAGGTCAAGAATATCTAGTGATAGATATCAATCCTTGGTTGACGAGGGTTTCGTTATTGTTGAGCGCGCATCACTGTATGGCGCTAGGAATACGCTTGACCAGCACAGCGACATGAGAATGGACATAGACAACATGAGCTATGAGGAACTGCTTACACTTGGTGAGAGGATTGGACATGTGAGCACAGGATTGTCACAGGATTTGCTTTCTAAGTGTTTGATTGAATCAATATTTTGTTCATCTGAGCATAGCCAAGATGAAGAAACTTGTGTAATCTGCCTTGAAGAATACAAGAACATGGATGATGTTGGAACACTTAAAACTTGTGGACATGACTACCATGTGGTCTGCATTAAAAAGTGGTTATCTATGAAGAAGATATGTCCTATTTGCAAAGCTTCTGCTTTGCCTGAGAATAAGAAGGTTAATTAA 1668 0.4197 MKMLKRELLAEKLLVYRGSTIRTTLMEHKHFYNTTSMFEGEPDQNWNHMHSDQKHVLLGMPSTSENGFLIHPVENMSSDSVSSPSSWNSTTRSNGYATSSVNIEVLPHQWDASDTSNNHFMHPSSAGAFFAVSENYAHHPSSNYDGQSFHINDGFIDLTMGSRRGPRKRKSPEIPSVCERGSTSRYFNAGSSTDLSISSEVRPEKPNIDYQYMPWDHATMTPTFRGGGLSIRGESSLRNVRSRSALDLEANIARTHLSSNHSHNSYSAALPVEHSSMVDPSGQTSNALARDWNQMNTSAFSLEASHFLVGSGATASNASLDVGAYHQEQPSTIRNPTVPRSVHNNLTQAVRGVRSNYSQRSTPTFRASSGLCLGYVTPSDDGLPVVAENYTSRHPRPRPSTISRCRNNDRNGRSRISSDRYQSLVDEGFVIVERASLYGARNTLDQHSDMRMDIDNMSYEELLTLGERIGHVSTGLSQDLLSKCLIESIFCSSEHSQDEETCVICLEEYKNMDDVGTLKTCGHDYHVVCIKKWLSMKKICPICKASALPENKKVN 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1823 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 547 IPR013083 -
Lal1g1823 555 MobiDBLite consensus disorder prediction 161 185 - -
Lal1g1823 555 SMART ring_2 502 543 IPR001841 -
Lal1g1823 555 MobiDBLite consensus disorder prediction 390 418 - -
Lal1g1823 555 SUPERFAMILY RING/U-box 492 548 - -
Lal1g1823 555 ProSiteProfiles Zinc finger RING-type profile. 502 544 IPR001841 -
Lal1g1823 555 Pfam Ring finger domain 501 544 IPR001841 -
Lal1g1823 555 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 26 550 IPR045191 GO:0061630
Lal1g1823 555 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 26 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1823 Lal-Chr1 20573847 20580341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1823 26 553 C3H Transcription Factor Family AT2G37150 39.130 6.86e-94 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1823 - - gmx:100803627 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1823 1 20573847 20580341 Lal1g1823 1 20573847 20580341 ECH
Lal11g1153 11 15216989 15223358 Lal1g1823 1 20573847 20580341 LSH