Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1822 ATGAGTATCATCGAAATTCTCACTAGAGTTGATTCCATTTGTAACAAGTACGACAAATACGACCTCCAAAAGAATAAGGATTCCAATTTCTCCGGCGACGATGCTTTCGCCAGACTCTACGCCGCCGTTGATTCTGACATCGACGCCGCACTTCAGAAAGCAGAAACTGCGTCGAAGGATAAAGGTAAAGCATCTGCGGTAGCTATCAATGCTGAGATTCGTCGTACGAAAGCAAGGTTGTTGGAGGAAGTTCCCAAATTGCAGAGGTTGGCTATTAAAAAGGTAAAGGGACTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCTTTGCCAGAGAGGATCCTAGCTATCCCAGATGGGACCCCTGCTGTGCCCAAACAAACTGGAGGCTGGGCAGCTTCTGCATCACGCCCTGAAATTAAATTTGATTCAGATGGACGATTTGATGATGAATACTTCCAACAAAGTGAGGAATCAAGTCAATTTAGGCAGGAGTATGAAATGCGTAAAATAAGACAGGCAAGTTTGGATGTGATCGCCGAAGGATTGGATACTTTGAAAAATATGGCACTTGACATGAATGAGGAACTGGATAAACAAGTTCCACTTATGGATGAGATTGATACTAAGGTGGACAAGGCATCCTCTGACCTTAAGAATACCAATGTTAGACTTAAACACACAGTTAACCAGCTTCGATCCAGTCGAAACTTCTGCATTGATATTGTTTTGTTGATTATAATATTGGGAATTGCTGCCTATTTATACAATGTGCTAAAGAAATGA 795 0.4189 MSIIEILTRVDSICNKYDKYDLQKNKDSNFSGDDAFARLYAAVDSDIDAALQKAETASKDKGKASAVAINAEIRRTKARLLEEVPKLQRLAIKKVKGLSSQEFAARNDLVLALPERILAIPDGTPAVPKQTGGWAASASRPEIKFDSDGRFDDEYFQQSEESSQFRQEYEMRKIRQASLDVIAEGLDTLKNMALDMNEELDKQVPLMDEIDTKVDKASSDLKNTNVRLKHTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1822 264 CDD SNARE_Qc 179 230 - -
Lal1g1822 264 Gene3D - 175 230 - -
Lal1g1822 264 Pfam SNARE domain 206 255 IPR000727 -
Lal1g1822 264 PANTHER SYNTAXIN-73 1 260 - -
Lal1g1822 264 PANTHER SYNTAXIN 1 260 IPR045242 -
Lal1g1822 264 SUPERFAMILY SNARE fusion complex 175 229 - -
Lal1g1822 264 SMART tSNARE_6 164 231 IPR000727 -
Lal1g1822 264 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 169 231 IPR000727 -
Lal1g1822 264 ProSitePatterns Syntaxin / epimorphin family signature. 175 214 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1822 Lal-Chr1 20566541 20570358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1822 1 263 SNARE and Associated Proteins AT3G09740 75.564 7.75e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1822 K08506 - gmx:100819272 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1822 1 20566541 20570358 Lal1g1822 1 20566541 20570358 ECH