Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1820 ATGCTTAACCTTATAAGTTTTTCGTTACCAATGGAGGGAATGCTCTACACAATCTTCATACTCAATTTTGTTTTGCTTTGCCAATTCATTTTCCTTCAACCTCTTGTTTCTGCTTCGGGTGGAAAACCTGGAAATTCTGCTGAGTTGTTCGAGAGGGTATCCGAAAGTATAAAAGTGAAGCATTACGCCGAGGCACTTGATGATCTCAATGCTGCAATAGAAGCAGATCCAAACCTTTCAGAAGCATACCTTTTCCGTGCATCAGTTCTTCGTCAGTTATGCAGATATGATCAATCTGAGACGAGCTACAAAAAGTTTCTGGAGTTAAAACCAGGACATTCAGCTGCAGAAAAGGAGCTCTCTCAGCTGTTGCAAGCAAAAAGTGCCCTGGAAACAGCTCAATCCCTATATGATTCGGGCAACTTTACAAAACCTTTGGAGTATATTGATAAAGTTGTTCTTGTTTTTTCTCCAGCTTGCACTAAGGCCAAGCTTCTTAAAGTGAGGTTGTTGATAGCTGATAAGGAATATGAGGGTGCTGTTGCTGAATCTGGGTTTATTCTCAAGGAAGATGAAAATAATTTAGAGGCATTGCTGTTACGTGGTCGTGCATTTTACTACTTAGCTGATCACGATGTAGCCACAAGGCATTTCCAGAAAGGTCTCCGTCTAGATCCAGAGCACGGTGAACTGAAAAAAGCATATTTTGGATTGAAAAATCTACTCAAAAAGAGTAAAAGTGCTGAAGAAAATGTGGGTAAGGGTAAGTTACGTGTGGCAGTGGAGGAATTCAAAAGCGCACTTGCAGTTGACCCTGACCATCTTGCACATAATGTACACCTTCATCTCGGCTTATGTAAGGTGCTAGTCAGGCTTGGCAGAGGAAAAGACGCCTTGAGTAGTTGTAGTGAAGCTCTTAAGATTAATGAGGGGCTTACTGAAGCTCTTGTTCAGAGGGGAGAAGCTAAGCTCTTAACGGAAGATTGGGAAGGAGCCGTGGAGGATCTGAAGTCGGCTGCTCAAAAATCTCCTCAGGATATGAATATCCGTGAAACATTAATGAGGGCGGAGAAAGCTTTAAAAATGAGCAAACGGAAGGATTACTACAAGATTTTAGGAATTTCAAAAACTGCTTCAGCCGCTGAGATCAAGCGTGCCTACAAGAAACTTGCCTTGCAATGGCACCCGGATAAGAATGTAGCCAATAGGGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCTGGTGCATATGAGATTCTCAGCGATGAAGACAAACGCGTGAGATATGACAGAGGGGAGGACCTTGAAGACGCAGGAGGAATGGGTGGGGGCGGAGGTTTCAACCCATTTGGTGGTGGAGGGCAGCAATATACTTTCACTTTTGATGGCGGCTTCCCTGGTGGTGGCGGCTTTGGTGGGGGCTTCCCGGGCGGGTACGAGTTCCACTTTTGA 1452 0.4415 MLNLISFSLPMEGMLYTIFILNFVLLCQFIFLQPLVSASGGKPGNSAELFERVSESIKVKHYAEALDDLNAAIEADPNLSEAYLFRASVLRQLCRYDQSETSYKKFLELKPGHSAAEKELSQLLQAKSALETAQSLYDSGNFTKPLEYIDKVVLVFSPACTKAKLLKVRLLIADKEYEGAVAESGFILKEDENNLEALLLRGRAFYYLADHDVATRHFQKGLRLDPEHGELKKAYFGLKNLLKKSKSAEENVGKGKLRVAVEEFKSALAVDPDHLAHNVHLHLGLCKVLVRLGRGKDALSSCSEALKINEGLTEALVQRGEAKLLTEDWEGAVEDLKSAAQKSPQDMNIRETLMRAEKALKMSKRKDYYKILGISKTASAAEIKRAYKKLALQWHPDKNVANREEAEAKFREIAGAYEILSDEDKRVRYDRGEDLEDAGGMGGGGGFNPFGGGGQQYTFTFDGGFPGGGGFGGGFPGGYEFHF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1820 483 ProSiteProfiles dnaJ domain profile. 367 433 IPR001623 -
Lal1g1820 483 SMART dnaj_3 366 425 IPR001623 -
Lal1g1820 483 ProSitePatterns Nt-dnaJ domain signature. 410 429 IPR018253 -
Lal1g1820 483 Gene3D DnaJ domain 365 472 IPR036869 -
Lal1g1820 483 SUPERFAMILY Chaperone J-domain 360 471 IPR036869 -
Lal1g1820 483 ProSiteProfiles TPR repeat profile. 80 113 IPR019734 GO:0005515
Lal1g1820 483 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
Lal1g1820 483 Gene3D Tetratricopeptide repeat domain 38 364 IPR011990 GO:0005515
Lal1g1820 483 SUPERFAMILY TPR-like 59 362 IPR011990 GO:0005515
Lal1g1820 483 Pfam Tetratricopeptide repeat 59 113 - -
Lal1g1820 483 PRINTS DnaJ domain signature 369 387 IPR001623 -
Lal1g1820 483 PRINTS DnaJ domain signature 387 402 IPR001623 -
Lal1g1820 483 PRINTS DnaJ domain signature 405 425 IPR001623 -
Lal1g1820 483 PRINTS DnaJ domain signature 425 444 IPR001623 -
Lal1g1820 483 Pfam DnaJ domain 367 430 IPR001623 -
Lal1g1820 483 SMART tpr_5 195 228 IPR019734 GO:0005515
Lal1g1820 483 SMART tpr_5 80 113 IPR019734 GO:0005515
Lal1g1820 483 SMART tpr_5 279 312 IPR019734 GO:0005515
Lal1g1820 483 SMART tpr_5 313 346 IPR019734 GO:0005515
Lal1g1820 483 SMART tpr_5 46 79 IPR019734 GO:0005515
Lal1g1820 483 Coils Coil 113 133 - -
Lal1g1820 483 CDD DnaJ 367 422 IPR001623 -
Lal1g1820 483 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 11 483 IPR044620 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1820 Lal-Chr1 20557068 20563689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1820 363 430 C2H2 Transcription Factor Family AT1G74250 45.833 3.37e-11 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1820 1 20557068 20563689 Lal1g1820 1 20557068 20563689 ECH
Lal11g1154 11 15234446 15241911 Lal1g1820 1 20557068 20563689 LSH
Lal1g1820 1 20557068 20563689 Lal20g0088 20 558678 562653 LSH