Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1818 ATGGCTACTGAAGCAGAAGACTTTCCCAAAAGCAATGCTACAATTTCCACTGATAACTCAATTCAGAAGGGTGTAGAGTTAACTGAAATAACTGAAGAGCTCCCTAGTAGACAACAACAACAACAACATGGGAGAAGGAAAAACCTTATCTTGGAGATTCCAACAAGAAATATGGATGAAACAAGAGAGGGTCTTTTTAGAATAAGTACACCTCCCACGACGCAGAATTTTGCATCTTTCTCGAGAAGCAATGAGGTTCAAGGTTCCTCATCAACAAAAAATAAATCAACTTTTAATACAACCCTTATTCCAAAATTCAGTTTTAGATTTCACAACATGAGTTCAGATATTGAAAAGGCTTCAGTACTGGAACTTGAAGGTTCACCGCCGGAGGTGGCACCGAAAAAGCCTATGATTTCAAGGACATTATCTCTTACAAAGTTTATCAGCAGTACTCCTGGTGGGAATAAAATGGCATCGTTACCGGTAACTCCGATTTCTCGATCAAATACCGAGTCTGCACATGGAGGAAGCACAGCATATCCAGCAACATCTGTTAAAAAAGGACAGCAATTTCCGATTCATCGTTCCCATTCAGTTCCAGTGCTTACCAAATATGGGAACACATCTTTAGGTGGCATGTTTCGTGTAGTTCCAACCACACCGCGGTTCGCTGGGAGTATTGCCACAACATATATAAAATCTCCACCTGAAGATACTGTTGAAAATGAGGATGGAGAAGATATTACGGAAGAAGAAGCCGTCTGCAGAATTTGTTTGATTGAATTAGAAGGTGGTGATACCCTTAAATTGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAGTGTGCAGTTAAATGGTTTAGTGTGAAAGGCAATAGAACATGTGATGTTTGTAAGCATGAAGTTCAGAACCTACCGGTCACTCTTCTAAGAGTTCTAAGTTCCCAGGGAGTTAGCTTTTTCGGGAGCAGACAGCGATACCGTCAACGGGTTTGGCAAAATGTTCCTGTTCTTGTCTTTATCAACATGCTGGCTTATTTTTGTTTTCTTGAACAGCTTCTTGTTTCTGGTATGGGATCTACGGCCGCTGCAATATCGATCCCATTTTCTTGTATACTCGGTCTTCTTGCTACCATGACATCCATAACAATGGTGAGGAGAAAATATGTCTGGCTTTATGCAACCGCCCAGTTTGTTATGGTGGTTCTCGCAGGACGCCTTTTCTACACTCTGCTTCCTAAGCAAGCTGTTGTTATATGTATTCTGCTATCTACATTTACTGGGTTTGGAGCTGTGATGTGTGGAGCTACTATTCTGAGTGAGTTTATGAAGTGGAGGAGAAGAAGGATTGTTCAGTTGAATCAGCAGCATGGTTCACAAGAGGTAGTAACTTCTCATCAAACATCATCAACAGAAACCACTGATCAACCTCAGAATGATTCTCAACAACATCAAGAATGTAACATGGAAGAGTCTACGCCGTGTGTAGGCTAA 1506 0.415 MATEAEDFPKSNATISTDNSIQKGVELTEITEELPSRQQQQQHGRRKNLILEIPTRNMDETREGLFRISTPPTTQNFASFSRSNEVQGSSSTKNKSTFNTTLIPKFSFRFHNMSSDIEKASVLELEGSPPEVAPKKPMISRTLSLTKFISSTPGGNKMASLPVTPISRSNTESAHGGSTAYPATSVKKGQQFPIHRSHSVPVLTKYGNTSLGGMFRVVPTTPRFAGSIATTYIKSPPEDTVENEDGEDITEEEAVCRICLIELEGGDTLKLECSCKGELALAHQECAVKWFSVKGNRTCDVCKHEVQNLPVTLLRVLSSQGVSFFGSRQRYRQRVWQNVPVLVFINMLAYFCFLEQLLVSGMGSTAAAISIPFSCILGLLATMTSITMVRRKYVWLYATAQFVMVVLAGRLFYTLLPKQAVVICILLSTFTGFGAVMCGATILSEFMKWRRRRIVQLNQQHGSQEVVTSHQTSSTETTDQPQNDSQQHQECNMEESTPCVG 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1818 501 SMART ringv_2 255 303 IPR011016 GO:0008270
Lal1g1818 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 310 IPR013083 -
Lal1g1818 501 ProSiteProfiles Zinc finger RING-CH-type profile. 248 309 IPR011016 GO:0008270
Lal1g1818 501 Pfam RING-variant domain 256 302 IPR011016 GO:0008270
Lal1g1818 501 SUPERFAMILY RING/U-box 252 306 - -
Lal1g1818 501 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 12 494 - -
Lal1g1818 501 MobiDBLite consensus disorder prediction 68 95 - -
Lal1g1818 501 MobiDBLite consensus disorder prediction 1 21 - -
Lal1g1818 501 PANTHER OS02G0165000 PROTEIN 12 494 - -
Lal1g1818 501 MobiDBLite consensus disorder prediction 460 501 - -
Lal1g1818 501 CDD RING_CH-C4HC3_MARCH 256 303 - -
Lal1g1818 501 MobiDBLite consensus disorder prediction 460 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1818 Lal-Chr1 20544365 20549415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1818 176 309 C3H Transcription Factor Family AT2G37950 27.941 7.56e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1818 - - gmx:100789854 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1818 1 20544365 20549415 Lal1g1818 1 20544365 20549415 ECH