Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1797 ATGCAAGTCCAAGAGGAACAACAACAACAACATGATCTCAATCACATGAAAATGATCAAGTTGAAGGGCAAGCGTACAAAGCGTCAAAGGCTACCATCTCTGCTTACATTAGCCATGCCTTCAACATCGTCGACCGATAATTCAGAAGAAGAGGAAGACATGGCTAATTGTTTGATTCTCTTGGCTCAAGGGCGTCATCATCATGATCATGATCATCGAACACAAAATTCACCAAAGTCATATAACACGAGAACACCTGATCATAACAACCGAAAGAAATTAGGGTTATATATTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCATTCCAAGCCCTTGGTGGCCATAGAGCTAGCCACATGAAACCTAAAGCAGATATTGCACAAGATCAAAAGCAAGGAGTTACTAGTTTTTTGAATGATTGTTTTGATAATTATTATGACTCTACAACCACAAACACTACCCTCACCTTGCAAATACCAAATAATAGGGCTACTAAGACTACTATTACTAAATGTAATAAAGTTCATGAGTGTTCCATTTGTGGGTCTGAATTCACATCTGGGCAAGCCTTAGGGGGTCATATGAGAAGGCACAGAACTGTTTTGAGCACTACTTCAACAACAACAACAACAACAACTTGTATGAGTGGTGCAAAAAATATTAGGGTTATTGGTGAGAGTCCTCATGAACCTAAAGATGTGAAAAGACCTAGAAATGTTTTGGAGTTGGACTTGAATCTTCCTGCACCTGATGAAGATCAAAGAGAATGCAAGTTGCTGTTTCAATCCAAAGAAAATGTTATTGTCGTAAATGCAACTTCTTTGGTGGGTTGCCATTACTAA 849 0.3899 MQVQEEQQQQHDLNHMKMIKLKGKRTKRQRLPSLLTLAMPSTSSTDNSEEEEDMANCLILLAQGRHHHDHDHRTQNSPKSYNTRTPDHNNRKKLGLYIYECKTCNRCFPSFQALGGHRASHMKPKADIAQDQKQGVTSFLNDCFDNYYDSTTTNTTLTLQIPNNRATKTTITKCNKVHECSICGSEFTSGQALGGHMRRHRTVLSTTSTTTTTTTCMSGAKNIRVIGESPHEPKDVKRPRNVLELDLNLPAPDEDQRECKLLFQSKENVIVVNATSLVGCHY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1797 282 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
Lal1g1797 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 200 IPR013087 -
Lal1g1797 282 MobiDBLite consensus disorder prediction 65 88 - -
Lal1g1797 282 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Lal1g1797 282 Pfam C2H2-type zinc finger 177 202 - -
Lal1g1797 282 Pfam C2H2-type zinc finger 99 124 - -
Lal1g1797 282 Gene3D Classic Zinc Finger 96 200 - -
Lal1g1797 282 PANTHER ZINC FINGER PROTEIN ZAT5 20 282 - -
Lal1g1797 282 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 20 282 - -
Lal1g1797 282 SUPERFAMILY beta-beta-alpha zinc fingers 98 200 IPR036236 -
Lal1g1797 282 SMART c2h2final6 99 121 IPR013087 -
Lal1g1797 282 SMART c2h2final6 178 200 IPR013087 -
Lal1g1797 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1797 Lal-Chr1 20297015 20297863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1797 21 282 C2H2 Transcription Factor Family AT2G28200 40.878 1.15e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal1g1797 zf-C2H2_6 1.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1797 - - lang:109356517 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1797 1 20297015 20297863 Lal12g0788 12 6129885 6130991 ECH
Lal1g1797 1 20297015 20297863 Lal13g0896 13 6178285 6180093 ECH
Lal1g1797 1 20297015 20297863 Lal24g0712 24 5314441 5319520 ECH
Lal1g1797 1 20297015 20297863 Lal1g1797 1 20297015 20297863 ECH
Lal1g1797 1 20297015 20297863 Lal2g0316 2 1887267 1888184 ECH
Lal1g1797 1 20297015 20297863 Lal9g0297 9 1909193 1910110 ECH
Lal1g1797 1 20297015 20297863 Lal1g0404 1 2487392 2488330 ECH
Lal1g1797 1 20297015 20297863 Lal10g1218 10 18542256 18543194 ECH
Lal1g1797 1 20297015 20297863 Lal20g0117 20 767694 768548 LSH