Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1772 ATGGATACTCGTAGATCGTTGGATAGATCGAGAGTTATTGAACCGGGCGCAAAGAAGCCTCGATTGATCAACGAGCTAGATCGCGGTTCGATTCTCGGTCCACCACCTTTGCCTCGGCGACAAGCGGCTTCTGGGGTTACAAAATTTGCGTCTGCGAGATTTGGAATAAATGGGAGGGACTTTGAGAAGAGTGATTCGGGGCGTGGTGGCGGCGATGATGATGATGGTGATGATGATGATGGTGGTTACCACCCGCAGCCGCCGCCGCACCAAGAGCTTGTTGTTCAGTATAAGACTGCACTTGCTGAATTGACTTTCAATTCGAAGCCGATTATTACGAATTTGACTATAATTGCTGGAGAGAATGTAGCTGCTGCTAAGGCTGTTGCTGGGATTGTTTGTTCTAATATTATTGAGGTGGGGACTGGGGACCTTTGGGTTCCAAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATCGGGCGGGATTATATAAAATACTTTGCTGACAGACTACCTGAGGTATTCTGTGAGGCATACAGACAGGTTGATCCTCGGTTACAATCAAGTATGAGACATCTTTTTGGAACTTGGAAAGGTGTCTTTCCTACTCAGACTCTTCAAATGATTGAGAAGGAACTTGGCTTTACTTCTGCAGCCAATGGTTCAGCTTCTACATCTGCTTCAGTCAGGAGTAACTCGCAGTCACAACCCCCACCTAATAGCATCCATGTGAACCCCAAATATCTAGAAAGGCAGCGTCTTCAGCAGTCCATCACGGTAGGTGAAATCATCGCACCTAAAACTTATTCTTTAAAGACTAAAGGGGGAGTAAATGATATGAATGAAGCTATATTGAACTCAAAAGAGGACCCAGAGAGAGCTTTGGGTTCTGCAAGACCATTGCTGGATCCTAGGATTACCATGCAAAATAATCTGCGCATTAATAGAGATGCGTTTAATGATTCTGTTCCTGAAAAGAACATTCGTGAGTCCTATGGAGGCAATCAATATAGTTCTGATACTTCAAGTAAATTGAGTTTAGTTGCTGGAAGAACTTTTGGTAGGGTCACCGAGTTAGGACATGACAAACCTTGGTACAAAGCAGGTGTTGTTGTTGCAGAGACCAGATCCGGGCAAGGAAATGATTTCAGTCTCAAGCCTGGGTTTTCAAATCATGAAGCATTGAAGTCCACGAAATTGGATACACATTGTCAGCCAACACTGAACATGACTAATAAAAGGAGCAGGGCTATGTCAAGTAACTGGAAAAATTCTGAGGAGGAGGAGTTCACATGGGATGAGATGAACTCTGGGTTGACTGGTCATGGTGCATCCAATGTCTCTAATAACTTGAGCACAGACACATGGACTGCTGATGATGAGAATTTGGAAGGTGAAGATCACCTACAAATTGCACACCCGTCCGGGGCAAAGGTTGAGAGAGAAATATTCACTGTTAAGAAACAACTACCTGCATTTGTGGGCCATCAATCATTGTCATGGAAATTGCAGGATCAACACTCAAATGATAAGTTGAATCTGAAGCCAGGTCACTCACAAGAACTTTTGTCCAATCCTGGTGGGTTTCCAACCAATACGAATTCTTTGTCTGTTGGGATGCAGAATCGGTCCTTCATGCCAAATGCAATGATAGGAATGACCGAAGTTATGAGACAACAGAAATTTGTTTCTGCTGGAGCCGAATCTCCATCATTGCCAGTAAATGTGCGCCACCCTCATCAAATGCAAAATTTGGCTGAGCAGGATCGTCCCCAGACTCGTAAAGCATCTCAGTATTTGGGAAGTCTGCAGAGCCAACATATTAGAGATCCTTCAATTGCCCTTCCTCCAAATGTCCAGGTTGGTAACTTGCAAAGATCACAGGAAAGGGACTTGCAGGGTCCATTATCTTTGGCAACTTCTTTTCAGCCTAAGATTCAACAGAAGCTGGGCCCTTCTCAGAGTGAAGTTACTGTTAAATCAAAGAAGCCACCTGAATCTAAAGTTGCTCTAGCCAGGAAAACTTCTGAGCAGTCAACCACAAGTAGTATGTCAGGTGCAACTGTGAAAAAGGGAATCTCACCCAAAAAATCAATTATTAGTAGTCTTCCTACTACAAGTAGTCTGGATACAAGGAATCTTCAACCTCAATTAGAGGTTAGGCCTACTCGGTCAAGTGGGCCTTCCCCTACGACATTAATTTCTTCAGTGTCTGTGGTCGCATCACCATCTTCATTAGGTCCTTTGAATGATGATTCACCTACGCTGCCAAAAATAACTCAACGAAAGGCTGGGCAATCACCAATGGGGTCTACTCAACTACCTGCTTCCTCTAATGGGAGCAGTGCTCGAGATCCGCCCTCAACTGCCAGCAATAATAATACCTCAAATCCAATTGCCAACCTTTTGAGCTCATTAGTTGCAAAGGGATTGATATCTTCAGAAACAGAGTCACCGGCTAAGGTACCAACTGAGGTGCCTAGTCAATTGGAAGAGAAAACGGAAAGCATTGCTGCCAGTAGCTCTTCACCAGTCGCTTCAGTTTCTGTTTCTGCAGCTGTCGGTATACCATCTTCCAGAGATGAGGTAGATGATACTGCAAAATCGTCACTTGCCTTATCTAAATCAACCAGCATGGAAATCAAAAATCTCATTGGCTTTGATTTTAAGCCAGATGTAATCCGAGAAATGCATCCACCTGTAATTAGCACTTTATTGGATGATCTCCCACATCATTGCACAATTTGTGGTACTCGGCTTAAACTACAAGAACAGTTTGATAGACACTTGGAGTGGCATGCCACTAGAGAAAAAGAACAAAGTGGTCTAATCACGTCATCAAGAAAATGGTATGTAAAATCAAATGATTGGATTGCTGCCAAGGATGAGTATCCTTCTCAGTACGAGCTCACTGATTCCGTAGATGTACATGACATGGAAAAAGAGGAGAATCAATTGGATGCTATGGTTCTAGCAGATGAAAATCAGTGCTTGTGTGTATTGTGTGGTGAGCTATTCGAAGATGTGTACTGTCAGGAAAGGGATGAGTGGATGTTCAAAGGGGCTGCATACCTGAACAACACAGATGACAATAATGAGATGGAAAGTAGAAATCCGGGTCCCATTATTCACACTAAATGCTTATCTAGTGTCACCTAG 3180 0.4343 MDTRRSLDRSRVIEPGAKKPRLINELDRGSILGPPPLPRRQAASGVTKFASARFGINGRDFEKSDSGRGGGDDDDGDDDDGGYHPQPPPHQELVVQYKTALAELTFNSKPIITNLTIIAGENVAAAKAVAGIVCSNIIEVGTGDLWVPSEQKLPSLYLLDSIVKNIGRDYIKYFADRLPEVFCEAYRQVDPRLQSSMRHLFGTWKGVFPTQTLQMIEKELGFTSAANGSASTSASVRSNSQSQPPPNSIHVNPKYLERQRLQQSITVGEIIAPKTYSLKTKGGVNDMNEAILNSKEDPERALGSARPLLDPRITMQNNLRINRDAFNDSVPEKNIRESYGGNQYSSDTSSKLSLVAGRTFGRVTELGHDKPWYKAGVVVAETRSGQGNDFSLKPGFSNHEALKSTKLDTHCQPTLNMTNKRSRAMSSNWKNSEEEEFTWDEMNSGLTGHGASNVSNNLSTDTWTADDENLEGEDHLQIAHPSGAKVEREIFTVKKQLPAFVGHQSLSWKLQDQHSNDKLNLKPGHSQELLSNPGGFPTNTNSLSVGMQNRSFMPNAMIGMTEVMRQQKFVSAGAESPSLPVNVRHPHQMQNLAEQDRPQTRKASQYLGSLQSQHIRDPSIALPPNVQVGNLQRSQERDLQGPLSLATSFQPKIQQKLGPSQSEVTVKSKKPPESKVALARKTSEQSTTSSMSGATVKKGISPKKSIISSLPTTSSLDTRNLQPQLEVRPTRSSGPSPTTLISSVSVVASPSSLGPLNDDSPTLPKITQRKAGQSPMGSTQLPASSNGSSARDPPSTASNNNTSNPIANLLSSLVAKGLISSETESPAKVPTEVPSQLEEKTESIAASSSSPVASVSVSAAVGIPSSRDEVDDTAKSSLALSKSTSMEIKNLIGFDFKPDVIREMHPPVISTLLDDLPHHCTICGTRLKLQEQFDRHLEWHATREKEQSGLITSSRKWYVKSNDWIAAKDEYPSQYELTDSVDVHDMEKEENQLDAMVLADENQCLCVLCGELFEDVYCQERDEWMFKGAAYLNNTDDNNEMESRNPGPIIHTKCLSSVT 1059
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1772 1059 CDD CID_Pcf11 96 213 - -
Lal1g1772 1059 MobiDBLite consensus disorder prediction 1 25 - -
Lal1g1772 1059 ProSitePatterns Zinc finger C2H2 type domain signature. 920 940 IPR013087 -
Lal1g1772 1059 MobiDBLite consensus disorder prediction 822 849 - -
Lal1g1772 1059 Pfam CID domain 99 214 IPR006569 -
Lal1g1772 1059 MobiDBLite consensus disorder prediction 650 667 - -
Lal1g1772 1059 SUPERFAMILY ENTH/VHS domain 89 218 IPR008942 -
Lal1g1772 1059 MobiDBLite consensus disorder prediction 231 252 - -
Lal1g1772 1059 MobiDBLite consensus disorder prediction 679 696 - -
Lal1g1772 1059 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1057 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lal1g1772 1059 MobiDBLite consensus disorder prediction 606 625 - -
Lal1g1772 1059 MobiDBLite consensus disorder prediction 705 804 - -
Lal1g1772 1059 MobiDBLite consensus disorder prediction 231 249 - -
Lal1g1772 1059 Gene3D - 86 221 IPR008942 -
Lal1g1772 1059 MobiDBLite consensus disorder prediction 57 90 - -
Lal1g1772 1059 MobiDBLite consensus disorder prediction 1 44 - -
Lal1g1772 1059 MobiDBLite consensus disorder prediction 650 804 - -
Lal1g1772 1059 ProSiteProfiles CID domain profile. 89 224 IPR006569 -
Lal1g1772 1059 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1057 - -
Lal1g1772 1059 SMART 558neu5 92 221 IPR006569 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal1g1772 Lal-Chr1 20082092 20088685 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1772 77 446 C2H2 Transcription Factor Family AT4G04885 37.968 6.27e-57 210
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1772 K14400 - gmx:100788958 1098.19
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1772 1 20082092 20088685 Lal1g1772 1 20082092 20088685 ECH
Lal1g1772 1 20082092 20088685 Lal20g0133 20 883820 889835 LSH