Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal1g1772 | ATGGATACTCGTAGATCGTTGGATAGATCGAGAGTTATTGAACCGGGCGCAAAGAAGCCTCGATTGATCAACGAGCTAGATCGCGGTTCGATTCTCGGTCCACCACCTTTGCCTCGGCGACAAGCGGCTTCTGGGGTTACAAAATTTGCGTCTGCGAGATTTGGAATAAATGGGAGGGACTTTGAGAAGAGTGATTCGGGGCGTGGTGGCGGCGATGATGATGATGGTGATGATGATGATGGTGGTTACCACCCGCAGCCGCCGCCGCACCAAGAGCTTGTTGTTCAGTATAAGACTGCACTTGCTGAATTGACTTTCAATTCGAAGCCGATTATTACGAATTTGACTATAATTGCTGGAGAGAATGTAGCTGCTGCTAAGGCTGTTGCTGGGATTGTTTGTTCTAATATTATTGAGGTGGGGACTGGGGACCTTTGGGTTCCAAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATCGGGCGGGATTATATAAAATACTTTGCTGACAGACTACCTGAGGTATTCTGTGAGGCATACAGACAGGTTGATCCTCGGTTACAATCAAGTATGAGACATCTTTTTGGAACTTGGAAAGGTGTCTTTCCTACTCAGACTCTTCAAATGATTGAGAAGGAACTTGGCTTTACTTCTGCAGCCAATGGTTCAGCTTCTACATCTGCTTCAGTCAGGAGTAACTCGCAGTCACAACCCCCACCTAATAGCATCCATGTGAACCCCAAATATCTAGAAAGGCAGCGTCTTCAGCAGTCCATCACGGTAGGTGAAATCATCGCACCTAAAACTTATTCTTTAAAGACTAAAGGGGGAGTAAATGATATGAATGAAGCTATATTGAACTCAAAAGAGGACCCAGAGAGAGCTTTGGGTTCTGCAAGACCATTGCTGGATCCTAGGATTACCATGCAAAATAATCTGCGCATTAATAGAGATGCGTTTAATGATTCTGTTCCTGAAAAGAACATTCGTGAGTCCTATGGAGGCAATCAATATAGTTCTGATACTTCAAGTAAATTGAGTTTAGTTGCTGGAAGAACTTTTGGTAGGGTCACCGAGTTAGGACATGACAAACCTTGGTACAAAGCAGGTGTTGTTGTTGCAGAGACCAGATCCGGGCAAGGAAATGATTTCAGTCTCAAGCCTGGGTTTTCAAATCATGAAGCATTGAAGTCCACGAAATTGGATACACATTGTCAGCCAACACTGAACATGACTAATAAAAGGAGCAGGGCTATGTCAAGTAACTGGAAAAATTCTGAGGAGGAGGAGTTCACATGGGATGAGATGAACTCTGGGTTGACTGGTCATGGTGCATCCAATGTCTCTAATAACTTGAGCACAGACACATGGACTGCTGATGATGAGAATTTGGAAGGTGAAGATCACCTACAAATTGCACACCCGTCCGGGGCAAAGGTTGAGAGAGAAATATTCACTGTTAAGAAACAACTACCTGCATTTGTGGGCCATCAATCATTGTCATGGAAATTGCAGGATCAACACTCAAATGATAAGTTGAATCTGAAGCCAGGTCACTCACAAGAACTTTTGTCCAATCCTGGTGGGTTTCCAACCAATACGAATTCTTTGTCTGTTGGGATGCAGAATCGGTCCTTCATGCCAAATGCAATGATAGGAATGACCGAAGTTATGAGACAACAGAAATTTGTTTCTGCTGGAGCCGAATCTCCATCATTGCCAGTAAATGTGCGCCACCCTCATCAAATGCAAAATTTGGCTGAGCAGGATCGTCCCCAGACTCGTAAAGCATCTCAGTATTTGGGAAGTCTGCAGAGCCAACATATTAGAGATCCTTCAATTGCCCTTCCTCCAAATGTCCAGGTTGGTAACTTGCAAAGATCACAGGAAAGGGACTTGCAGGGTCCATTATCTTTGGCAACTTCTTTTCAGCCTAAGATTCAACAGAAGCTGGGCCCTTCTCAGAGTGAAGTTACTGTTAAATCAAAGAAGCCACCTGAATCTAAAGTTGCTCTAGCCAGGAAAACTTCTGAGCAGTCAACCACAAGTAGTATGTCAGGTGCAACTGTGAAAAAGGGAATCTCACCCAAAAAATCAATTATTAGTAGTCTTCCTACTACAAGTAGTCTGGATACAAGGAATCTTCAACCTCAATTAGAGGTTAGGCCTACTCGGTCAAGTGGGCCTTCCCCTACGACATTAATTTCTTCAGTGTCTGTGGTCGCATCACCATCTTCATTAGGTCCTTTGAATGATGATTCACCTACGCTGCCAAAAATAACTCAACGAAAGGCTGGGCAATCACCAATGGGGTCTACTCAACTACCTGCTTCCTCTAATGGGAGCAGTGCTCGAGATCCGCCCTCAACTGCCAGCAATAATAATACCTCAAATCCAATTGCCAACCTTTTGAGCTCATTAGTTGCAAAGGGATTGATATCTTCAGAAACAGAGTCACCGGCTAAGGTACCAACTGAGGTGCCTAGTCAATTGGAAGAGAAAACGGAAAGCATTGCTGCCAGTAGCTCTTCACCAGTCGCTTCAGTTTCTGTTTCTGCAGCTGTCGGTATACCATCTTCCAGAGATGAGGTAGATGATACTGCAAAATCGTCACTTGCCTTATCTAAATCAACCAGCATGGAAATCAAAAATCTCATTGGCTTTGATTTTAAGCCAGATGTAATCCGAGAAATGCATCCACCTGTAATTAGCACTTTATTGGATGATCTCCCACATCATTGCACAATTTGTGGTACTCGGCTTAAACTACAAGAACAGTTTGATAGACACTTGGAGTGGCATGCCACTAGAGAAAAAGAACAAAGTGGTCTAATCACGTCATCAAGAAAATGGTATGTAAAATCAAATGATTGGATTGCTGCCAAGGATGAGTATCCTTCTCAGTACGAGCTCACTGATTCCGTAGATGTACATGACATGGAAAAAGAGGAGAATCAATTGGATGCTATGGTTCTAGCAGATGAAAATCAGTGCTTGTGTGTATTGTGTGGTGAGCTATTCGAAGATGTGTACTGTCAGGAAAGGGATGAGTGGATGTTCAAAGGGGCTGCATACCTGAACAACACAGATGACAATAATGAGATGGAAAGTAGAAATCCGGGTCCCATTATTCACACTAAATGCTTATCTAGTGTCACCTAG | 3180 | 0.4343 | MDTRRSLDRSRVIEPGAKKPRLINELDRGSILGPPPLPRRQAASGVTKFASARFGINGRDFEKSDSGRGGGDDDDGDDDDGGYHPQPPPHQELVVQYKTALAELTFNSKPIITNLTIIAGENVAAAKAVAGIVCSNIIEVGTGDLWVPSEQKLPSLYLLDSIVKNIGRDYIKYFADRLPEVFCEAYRQVDPRLQSSMRHLFGTWKGVFPTQTLQMIEKELGFTSAANGSASTSASVRSNSQSQPPPNSIHVNPKYLERQRLQQSITVGEIIAPKTYSLKTKGGVNDMNEAILNSKEDPERALGSARPLLDPRITMQNNLRINRDAFNDSVPEKNIRESYGGNQYSSDTSSKLSLVAGRTFGRVTELGHDKPWYKAGVVVAETRSGQGNDFSLKPGFSNHEALKSTKLDTHCQPTLNMTNKRSRAMSSNWKNSEEEEFTWDEMNSGLTGHGASNVSNNLSTDTWTADDENLEGEDHLQIAHPSGAKVEREIFTVKKQLPAFVGHQSLSWKLQDQHSNDKLNLKPGHSQELLSNPGGFPTNTNSLSVGMQNRSFMPNAMIGMTEVMRQQKFVSAGAESPSLPVNVRHPHQMQNLAEQDRPQTRKASQYLGSLQSQHIRDPSIALPPNVQVGNLQRSQERDLQGPLSLATSFQPKIQQKLGPSQSEVTVKSKKPPESKVALARKTSEQSTTSSMSGATVKKGISPKKSIISSLPTTSSLDTRNLQPQLEVRPTRSSGPSPTTLISSVSVVASPSSLGPLNDDSPTLPKITQRKAGQSPMGSTQLPASSNGSSARDPPSTASNNNTSNPIANLLSSLVAKGLISSETESPAKVPTEVPSQLEEKTESIAASSSSPVASVSVSAAVGIPSSRDEVDDTAKSSLALSKSTSMEIKNLIGFDFKPDVIREMHPPVISTLLDDLPHHCTICGTRLKLQEQFDRHLEWHATREKEQSGLITSSRKWYVKSNDWIAAKDEYPSQYELTDSVDVHDMEKEENQLDAMVLADENQCLCVLCGELFEDVYCQERDEWMFKGAAYLNNTDDNNEMESRNPGPIIHTKCLSSVT | 1059 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal1g1772 | 1059 | CDD | CID_Pcf11 | 96 | 213 | - | - | |
Lal1g1772 | 1059 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lal1g1772 | 1059 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 920 | 940 | IPR013087 | - | |
Lal1g1772 | 1059 | MobiDBLite | consensus disorder prediction | 822 | 849 | - | - | |
Lal1g1772 | 1059 | Pfam | CID domain | 99 | 214 | IPR006569 | - | |
Lal1g1772 | 1059 | MobiDBLite | consensus disorder prediction | 650 | 667 | - | - | |
Lal1g1772 | 1059 | SUPERFAMILY | ENTH/VHS domain | 89 | 218 | IPR008942 | - | |
Lal1g1772 | 1059 | MobiDBLite | consensus disorder prediction | 231 | 252 | - | - | |
Lal1g1772 | 1059 | MobiDBLite | consensus disorder prediction | 679 | 696 | - | - | |
Lal1g1772 | 1059 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 3 | 1057 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Lal1g1772 | 1059 | MobiDBLite | consensus disorder prediction | 606 | 625 | - | - | |
Lal1g1772 | 1059 | MobiDBLite | consensus disorder prediction | 705 | 804 | - | - | |
Lal1g1772 | 1059 | MobiDBLite | consensus disorder prediction | 231 | 249 | - | - | |
Lal1g1772 | 1059 | Gene3D | - | 86 | 221 | IPR008942 | - | |
Lal1g1772 | 1059 | MobiDBLite | consensus disorder prediction | 57 | 90 | - | - | |
Lal1g1772 | 1059 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Lal1g1772 | 1059 | MobiDBLite | consensus disorder prediction | 650 | 804 | - | - | |
Lal1g1772 | 1059 | ProSiteProfiles | CID domain profile. | 89 | 224 | IPR006569 | - | |
Lal1g1772 | 1059 | PANTHER | RNA POLYMERASE II-BINDING DOMAIN PROTEIN | 3 | 1057 | - | - | |
Lal1g1772 | 1059 | SMART | 558neu5 | 92 | 221 | IPR006569 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal1g1772 | Lal-Chr1 | 20082092 | 20088685 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal1g1772 | 77 | 446 | C2H2 Transcription Factor Family | AT4G04885 | 37.968 | 6.27e-57 | 210 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal1g1772 | K14400 | - | gmx:100788958 | 1098.19 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal1g1772 | 1 | 20082092 | 20088685 | Lal1g1772 | 1 | 20082092 | 20088685 | ECH | |
Lal1g1772 | 1 | 20082092 | 20088685 | Lal20g0133 | 20 | 883820 | 889835 | LSH |