Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1739 ATGTCTATAAACCAGTTTTCATCACCAAACACAACAAAAGCAACAACCCTATGGTGGACTCAGCATGCAGGACCATCAAGGGTACCCCTAATACCCAATAACCCATTTTTCAATCTCATCAACAACAACAATGATGATGATGAGGTTGAAAACATTAAGCTACCACTGTATGAAGATGAAGCCGCCACCACCACCACCCCAGAGGGAGGAGAAGAAGCAGTTGAAGAAGAAGAAAAGGAACCCATGTTCGAGAAATCATTGACACCAAGTGATGTTGGAAAACTGAACCGTTTGGTTATACCAAAGCAATATGCTGAGAAATACTTCCCACTCGGTGGTGGTGGTGACTCAGTAGAGAGCAAGGGTTTGTTGCTGAGTTTAGAGGACGAATCAGGGATATGTTGGAGGTTTCGTTACTGTTATTGGAATAGTAGCCAGAGCTATGTTTTAACCAAAGGTTGGAGCCGTTATGTTAAGGATAAGAGACTCGATGCTGGTGATGTTGTTTTGTTTCAGCGACACCGGTTTCAGCCTAACCGGCTTTTTATTGGGTGGAAGCGCAGCCATTTCAACGGTGGCTCCACCGTGCCGGCGCATGTTGGGAAGGTTGATATAAATGGTAATAAGAATAATGGGAATGACAATGTTCAACTTGGGTGGACCACAGGATTCTATTCTGCGCATCGTTCTTATCCTATCCGTCATCGCCATTTTCCTTACCTTCATGCAGGTGGAGGTTCCCAACAAGATCAGAAGCAAAGGACACCAATGAGGAACACTTCCAATTCAAGGGTGTTGAGGTTGTTTGGGGTGAACATGGAATGCCAAAGTGGAAAAAATGATTCTGAAACCTTAAGTTCCTACAATATGTCATCAACACCTACTACAACTACCCTTAACATGTTACCAAGATTTTAA 918 0.4346 MSINQFSSPNTTKATTLWWTQHAGPSRVPLIPNNPFFNLINNNNDDDEVENIKLPLYEDEAATTTTPEGGEEAVEEEEKEPMFEKSLTPSDVGKLNRLVIPKQYAEKYFPLGGGGDSVESKGLLLSLEDESGICWRFRYCYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRFQPNRLFIGWKRSHFNGGSTVPAHVGKVDINGNKNNGNDNVQLGWTTGFYSAHRSYPIRHRHFPYLHAGGGSQQDQKQRTPMRNTSNSRVLRLFGVNMECQSGKNDSETLSSYNMSSTPTTTTLNMLPRF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1739 305 SMART B3_2 83 189 IPR003340 GO:0003677
Lal1g1739 305 CDD B3_DNA 81 176 IPR003340 GO:0003677
Lal1g1739 305 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 41 284 IPR044800 GO:0003700
Lal1g1739 305 ProSiteProfiles B3 DNA-binding domain profile. 83 189 IPR003340 GO:0003677
Lal1g1739 305 MobiDBLite consensus disorder prediction 242 262 - -
Lal1g1739 305 Gene3D - 71 194 IPR015300 -
Lal1g1739 305 MobiDBLite consensus disorder prediction 246 262 - -
Lal1g1739 305 SUPERFAMILY DNA-binding pseudobarrel domain 79 186 IPR015300 -
Lal1g1739 305 MobiDBLite consensus disorder prediction 59 86 - -
Lal1g1739 305 Pfam B3 DNA binding domain 83 187 IPR003340 GO:0003677
Lal1g1739 305 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 41 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1739 Lal-Chr1 19819148 19820457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1739 74 283 RAV Transcription Factor Family AT5G06250 49.309 6.33e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal1g1739 B3 1.4e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1739 - - aprc:113872948 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1739 1 19819148 19820457 Lal1g1739 1 19819148 19820457 ECH
Lal1g1739 1 19819148 19820457 Lal20g0178 20 1244451 1246680 LSH
Lal1g1739 1 19819148 19820457 Lal13g1364 13 12889574 12891912 PCT