Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1735 ATGTCCGGCGGCGCTAGACCTCCGAACCGCCGTCAACCTACACCGCGGGAAGGTTTGATCATATCGAACCGGCCGCCGCTGAAGCGTAACCTCGCCTTCACATCGACTAAGCCGCCGTTTGCTCCGCCCTATGAATACCGCAGCTTCTCCGATTCCAAACCCTCCGGTCACGTTGATGAAGCTGTTGTTGTTAGATCACCATACATGAAGTTGAAGAATGGACTGAATGGCACTGAAGGAGAGTCAAAGGAGCCGAGTCGTAGTCTTGGATACAATAACGTAATTAATAATCCGTTGAAAACTCCTGTGTCTAAAAAAGGGGGAAGGAAATATAATAAAGCAAAGGTTCCAAGGGATGGTAGATCTTGTCCACCAACACCGATCTCAGAAGCTGGATCCCCTTCTCCTGCTAGCAACTGTCGTTATGACAGTTCCTTAGGTCTCTTAACAAAAAAGTTCATTCATTTGCTCAAGCATGCAGAGGGTGGCAATCTTGACCTAAATAATGCAGCAGAGACCTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTAATTGAGAAGAAGATCAAGAACAACATACATTGGAAGGGAGTTGATTGTTCTTCATCTGGTGAGCAAAATGGTGATGTCTCTATGCTGAAGGAAGAAGTTGAAAAACTTTCTTTGGAAGAGTGCAGATTAGATGGTCAAATAAGCGAAATGCAAGAAAGGCTGAGGAGTTTGAGTGAAGATGAAAACAAAAAGAAGTTTTTCTTTGTAACTGAAGATGATATTAAATCTCTACCATGCTTCCAGAATGAAACTCTAATAGCAATCAAAGCTCCACATGGAACCACTCTGGAAGTTCCTGAACCCGAGGAAGCTGTTGACTATCCACAGAGGAGATATAGGGTCATTCTTATAAGCAAAATGGGTCCCATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATGAGCTTGCAACGTGCTTCAAGTTCAGAGTCCAACGAGTGTCTAGCAAAAGGCGTCATTCCTGTTGAATGTGGTGATGACGGCCTTGAACCTCAAGCTCCACACTCTTCTCATAAATGCTCTGATATAAATAGTGCACAAGAGTTTGGTGGGGGTATGATGAAAATTGTTCCTTCAGAGGCTGATACTGATGAAGATTATTGGCTTCTATCAGATGCTGGAGCTAGCATAACCGACATATGGAAAGCAGATTCTGTTTTGGATTGGAATGCAGTGGACATACTTGATCCTGACTTTGGAATCATCTCAAGGCCACAAACTCCATCATCTCAGTTTTCTGAAGCACCATCTGCAGTAGCTAATGCAACTAAAAGGTGA 1368 0.4327 MSGGARPPNRRQPTPREGLIISNRPPLKRNLAFTSTKPPFAPPYEYRSFSDSKPSGHVDEAVVVRSPYMKLKNGLNGTEGESKEPSRSLGYNNVINNPLKTPVSKKGGRKYNKAKVPRDGRSCPPTPISEAGSPSPASNCRYDSSLGLLTKKFIHLLKHAEGGNLDLNNAAETLEVQKRRIYDITNVLEGIGLIEKKIKNNIHWKGVDCSSSGEQNGDVSMLKEEVEKLSLEECRLDGQISEMQERLRSLSEDENKKKFFFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPEPEEAVDYPQRRYRVILISKMGPIDVYLISQFEEKFEEMSLQRASSSESNECLAKGVIPVECGDDGLEPQAPHSSHKCSDINSAQEFGGGMMKIVPSEADTDEDYWLLSDAGASITDIWKADSVLDWNAVDILDPDFGIISRPQTPSSQFSEAPSAVANATKR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1735 455 SUPERFAMILY "Winged helix" DNA-binding domain 141 204 IPR036390 -
Lal1g1735 455 Pfam E2F transcription factor CC-MB domain 222 322 IPR032198 GO:0046983
Lal1g1735 455 Gene3D - 135 209 IPR036388 -
Lal1g1735 455 MobiDBLite consensus disorder prediction 72 137 - -
Lal1g1735 455 MobiDBLite consensus disorder prediction 79 100 - -
Lal1g1735 455 PANTHER TRANSCRIPTION FACTOR E2F 25 442 IPR015633 GO:0000978|GO:0006357
Lal1g1735 455 SUPERFAMILY E2F-DP heterodimerization region 219 323 IPR037241 -
Lal1g1735 455 Gene3D - 214 323 - -
Lal1g1735 455 MobiDBLite consensus disorder prediction 1 56 - -
Lal1g1735 455 SMART E2F_TDP_2 141 206 IPR003316 GO:0005667|GO:0006355
Lal1g1735 455 Pfam E2F/DP family winged-helix DNA-binding domain 143 206 IPR003316 GO:0005667|GO:0006355
Lal1g1735 455 PANTHER TRANSCRIPTION FACTOR E2FB 25 442 - -
Lal1g1735 455 MobiDBLite consensus disorder prediction 433 455 - -
Lal1g1735 455 CDD E2F_DD 222 323 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1735 Lal-Chr1 19781534 19786796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1735 25 449 E2F-DP Transcription Factor Family AT2G36010 50.652 8.39e-135 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lal1g1735 E2F_CC-MB 8.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1735 K06620 - gmx:100811762 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1735 1 19781534 19786796 Lal1g1735 1 19781534 19786796 ECH