Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1729 ATGGAGATTCAAAGTGTTTATCTTAAAGAGCATGAAGGAATTCATGCAAGTTCAGCACCATGGTGGAGTTCCTTTGCATCTGAATCTGGTTATGGTGAATCTTATGGTCAAATGAAACCTTTTTCATTGGATTTTCCAAACTATGAAGACCAACTTGCTGGTACTAAGAAATCAGCAAGAGTAGCTGAACAAGTGTTTGGTAAAGGATATACAACTCAGTTTACAATCTTTTCAGTTACAGTTCTTGCTATACTTGGCAAAAGAACTTTTCTTGTGAATAATAACAACAACGACCAAGCCTTTTATCCCACTAGGTGGGGTCGGCTACATGGATTGAACGACACCATTATGCTCTGTTATAAAACATTGAACTCTACGTCTTGTTCAGATGTTTTTAAAATGTCAGGTGGTGCACAAAAGCCACAGGCAACCACATCCCTGCAATCATCACTTACTGATACCAGCACTCATTTTGAGCTAGGATTTACTCAACCAATGATCTCAGCAAAATACCCTTATGCTGACCAATTTTATGGACTCTTCTCAACTTATGGAACTCAAATTTCGGGACGTATAATGCTTCCACTTAACATGACTTGTGATGATGGACCAGTTTATGTTAATGCTAAGCAGTACCATGGAATCATTAGGCGTAGGCAGTCCCGAGCTAAAGCTGTACTCGATAACAAATCGATAAAACGTCGCAAGCCCTATATGCATGAATCACGCCATCGCCATGCAATGCGGCGACCAAGAGGATGCGGCGGTCGGTTCCTGAACACAAGGAAATCTGCTAATGGAAATGGTAAAAGTGGAAATGAAGTGAACAAAAGTAGTGGTCAACAATTACACTCCAGTGGCTCTCAGGGTTCTGAAATCCTGCAATCAGAGGTTGGAACTTTGAATTCATCAAAGGAGACTAATGGCAGCAGTCCTAATATTTCTGGATCAGAGGTGACTAGCATGTATTCGCGTGGAGGTCTCGACAGCTTCACATTCAATCATATTGGTTCTGAGGCTGTCCATTCTCTGACCGATATAATAGACGGTGGGCGTGGTATCATCAAGCCCACAAAATGGGTTGTAGCAAGTGGCAAGGAATCAAGTGGATTTGGTACAACGCAATGTTGTACCAAGCCCGATCCTTGTTCTAACCAGATGTTCCTGGAGGCTGACCCCAACATCTGGTTAGAAGGCAACTCATCCTTGGCTCATAATATCTATAGTACTACTCTTTGCCTTTCTGCACAGGATACATGCTAA 1263 0.4204 MEIQSVYLKEHEGIHASSAPWWSSFASESGYGESYGQMKPFSLDFPNYEDQLAGTKKSARVAEQVFGKGYTTQFTIFSVTVLAILGKRTFLVNNNNNDQAFYPTRWGRLHGLNDTIMLCYKTLNSTSCSDVFKMSGGAQKPQATTSLQSSLTDTSTHFELGFTQPMISAKYPYADQFYGLFSTYGTQISGRIMLPLNMTCDDGPVYVNAKQYHGIIRRRQSRAKAVLDNKSIKRRKPYMHESRHRHAMRRPRGCGGRFLNTRKSANGNGKSGNEVNKSSGQQLHSSGSQGSEILQSEVGTLNSSKETNGSSPNISGSEVTSMYSRGGLDSFTFNHIGSEAVHSLTDIIDGGRGIIKPTKWVVASGKESSGFGTTQCCTKPDPCSNQMFLEADPNIWLEGNSSLAHNIYSTTLCLSAQDTC 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1729 420 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 204 258 IPR001289 GO:0003700|GO:0006355
Lal1g1729 420 PRINTS CCAAT-binding transcription factor subunit B signature 204 226 IPR001289 GO:0003700|GO:0006355
Lal1g1729 420 PRINTS CCAAT-binding transcription factor subunit B signature 235 258 IPR001289 GO:0003700|GO:0006355
Lal1g1729 420 MobiDBLite consensus disorder prediction 261 321 - -
Lal1g1729 420 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 126 365 IPR001289 GO:0003700|GO:0006355
Lal1g1729 420 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 74 IPR001289 GO:0003700|GO:0006355
Lal1g1729 420 MobiDBLite consensus disorder prediction 223 321 - -
Lal1g1729 420 MobiDBLite consensus disorder prediction 236 252 - -
Lal1g1729 420 ProSiteProfiles NF-YA/HAP2 family profile. 201 261 IPR001289 GO:0003700|GO:0006355
Lal1g1729 420 SMART cbf3 200 261 IPR001289 GO:0003700|GO:0006355
Lal1g1729 420 Gene3D - 202 262 - -
Lal1g1729 420 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 126 365 - -
Lal1g1729 420 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1729 Lal-Chr1 19720629 19724306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1729 140 377 CCAAT-HAP2 Transcription Factor Family AT3G05690 47.390 5.87e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lal1g1729 CBFB_NFYA 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1729 K08064 - gmx:100815382 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1729 1 19720629 19724306 Lal1g1729 1 19720629 19724306 ECH