Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1723 ATGGAGGTTCCAGAGATGGAAGGAAAGACTGAAAGTCATTTGATATCGGCTGCCGCCTTCGTTGAAGGAGGGATTCAAGAATCATGTGATGATGCTTGCAGCATATGCCTTGAAGATTTTTGTGAAAGTGATCCTTCAACGGTTACTATTTGCAAGCACGAGTTTCACTTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAACCTATTAAACTGAAGGATCCGATCGGTCAAGAATTGTTCGAAGCAGTAGAGCATGAAAGGAGCTTAAGGGATATTCCATCAAGAAATGCTGCTATTTTTCATCACCCTGCGCTTGGTGATTTTGACTTCCAGCAGTTACGCATCGGCGACTCTGATTTTGAAGAGCGAATAATTCAACATTTAGCTGCTGCTGCAGCAATGGGAAGAGCACAACACCGTGGTAGGAGAGAAGGGCATCGAACAAGATCATCTGCCAACCGTCATCCACAATTCTTAGTATTCTCAAGTCAGCCTAGCGCACCTTCAGGCCCTGATTCAAGTCCTGAAGGGGGTAATGAATCAACTGCAATTCCGGTCGGAAGTTCGTCTACCGTAATGACATCCGATGGAGATGAACCAGCACAGCAGATACCACATCATCAAACTCAAAGCTCTTCCCCAGCTCTTGGATCTACTGTCATGCCAACAAACTACTCTAATGATAGAGGCTCTGGTGCTCATTCTTCACCAGTAAACCAAGATAGAGCCGGGCCATCAGATTTCCAGTCATTTTCTGATTCTCTACGATCAAAATTTAATGCGGTGTCCATGAGATACAAAGAGTCAATTTCAAAAGGCGCGAAGGGATGGAAGGAGAGGTTGTTCTCTCGTAATAATTCTTCCATGTCAGAAGTTGGTTCAGAAGCTAGTAGAGAGGCAAACGTTGGCATTGCCAGTGTATCCCGATTGGTGGAATCCCTTGAAACAAGAGAAAATAATAGAGTTGTCGGTACATCTTTGTCAAATCATTTGGAGGGGCGCTCTATCACGACACCAGAGATGAGTAACCAGAACAATGTGGAAGGTAGCGGAGAGAACTCTTCACATGATAACAATACTACAGCTGCTTGTTCTGCTGGCTCACATTCAACTTGA 1140 0.4482 MEVPEMEGKTESHLISAAAFVEGGIQESCDDACSICLEDFCESDPSTVTICKHEFHLQCILEWCQRSSQCPMCWQPIKLKDPIGQELFEAVEHERSLRDIPSRNAAIFHHPALGDFDFQQLRIGDSDFEERIIQHLAAAAAMGRAQHRGRREGHRTRSSANRHPQFLVFSSQPSAPSGPDSSPEGGNESTAIPVGSSSTVMTSDGDEPAQQIPHHQTQSSSPALGSTVMPTNYSNDRGSGAHSSPVNQDRAGPSDFQSFSDSLRSKFNAVSMRYKESISKGAKGWKERLFSRNNSSMSEVGSEASREANVGIASVSRLVESLETRENNRVVGTSLSNHLEGRSITTPEMSNQNNVEGSGENSSHDNNTTAACSAGSHST 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1723 379 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 7 378 - -
Lal1g1723 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 7 378 - -
Lal1g1723 379 SMART ring_2 33 73 IPR001841 -
Lal1g1723 379 Pfam Ring finger domain 32 73 IPR001841 -
Lal1g1723 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 81 IPR013083 -
Lal1g1723 379 MobiDBLite consensus disorder prediction 160 260 - -
Lal1g1723 379 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Lal1g1723 379 SUPERFAMILY RING/U-box 26 80 - -
Lal1g1723 379 MobiDBLite consensus disorder prediction 333 379 - -
Lal1g1723 379 MobiDBLite consensus disorder prediction 143 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1723 Lal-Chr1 19662417 19667646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1723 30 81 C3H Transcription Factor Family AT4G00335 46.154 1.41e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1723 K19043 - gmx:100800419 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1723 1 19662417 19667646 Lal1g1723 1 19662417 19667646 ECH
Lal1g1723 1 19662417 19667646 Lal20g0207 20 1465227 1470521 LSH