Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1720 ATGAACATGGAGAATGCAAATTCATCTGGATTGGCAAGAACTAAATCGGATCAACTAGTAGATTTAGTGGTATCAGCTCTTAAGTCTCAATCATCTGGTGATTCGATAGGAGTGGTGGATGGTGATGGTGGTGGTGGAAGTAGCATGACAAGGAAGTCAAGTTGGAGAATGATGGGAGCGTCGCCGAGTCGCGGCGGCGGCGGCGGTGGTGGTAGTAGAAAGACACACATAAGGAAGACTAGTAGTGGTGTTGCTCTTAGTAGAGCTTCTAGCAGCATGGATTTCTCATTCTCTTTTACTGGCTTCACTCTTCCTCCTGATGAGATTTCTGACTCTAAGCCCTTCAGTGATGATGATATTCCTGAAGATATTGAAGCTGGAATTCATAAGCCAAAGTTTCAAGCAGAACCTACTTTACCAATATATCTAAAGTTCACTGATGTGGCCTACAAGGTAGTGATTAAAGGCATGGCCAAAAGTGAAGAGAAGGATATATTGAAGGGTATCACTGGTGCTGTAAATCCAGGTGAAGTTTTGGCATTGATGGGTCCTTCAGGAAGTGGAAAGACATCTCTTTTGAATCTAATTGGAGGAAGGTTAAGTCATCCAACAATTACTGGCTCTATCAGTTACAATGATCAACCATACTCTAAGTTTTTAAAGAGCAGTGTTTTTGTTGGGTTTATTCCTCCCATATTGGATATGACGGGAGGAGTGAAAAGGATTGGATTTGTGACACAAGATGATGTTCTGTCTCCTCACCTAACTGTGAAAGAGACTCTGACATATGCAGCACGCCTTAAATTGCCAAAAACATTAACTAGACAGCAAAAGGAAAAAAGAGCTTTAGATGTCATCTATGAACTTGGCTTAGAGAGGTGCCAAGATACTATGATAGGAGGTTCCTTTGTTAGAGGAGTATCTGGTGGAGAGAGGAAGAGAGTTTGTGTTGGCAATGAGATCATAATAAACCCTTCTCTATTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACTGCATTGAAGATGGTTCAGATGCTACATGACATAGCTGAGGCTGGAAAAACTGTTGTGACAACAATTCATCAACCATCAAGTAGACTCTTCCATAAATTTGATAAGTTGATCCTTCTAGGAAAAGGGAACTTGCTTTACTTTGGAAAAGCATCTGAAGCAATGGACTATTTTCAACTCATAGGGTGTTCACCTCTTATTGCAATGAATCCAGCAGAATTTTTACTAGACCTTGCAAATGGAAACTTAAATGATGTTTCTGTACCATCAGAGTTAGAGGATAAACTGCTTATAGGAGATACACAAGCTGAAACAAGGAATGGAAAACCATCACCTGCACTTGTACAAGAGTATCTGGTGGAGTCATATGAGAGTAGAGTTGCAGAAATAGAGAAGAAAAGGCTAATGGTTCCTACACCTCTTGATGAAGAAATGAAGTCCAAGGTTACTTGTCCGAAAAGGGAATGGGGGGCAAGTTGGTTTGAACAATATTCGATATTGTTTTGGAGAGGAATCAAAGAAAGGAAGCATGACTATTTTAGCTGGTTGAGAATCACACAAGTTCTATCTACTGCTGTTATCTTAGGATTATTGTGGTGGCAATCACATGCTAACAACCTTAAAGGCCTGCAAGACCAGGCAGGACTTCTTTTCTTTATAGCAGTATTTTGGGGATTCTTTCCTGTTTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGACTAAGGAAAGAGCAACAGATATGTACAGATTAAGTGCATACTTTGTGGCTAGAATTACAAGTGACCTTCCACTAGACCTTGTACTACCAATACTTTTCCTACTTGTTGTTTACTTCATGGCCGGTTTGAGACTCAGTACAGGACCCTTTTTCCTTACCATTCTTACAGTTTTTCTCTGCATTGTGGCAGCTCAGGGACTTGGACTTGCCATTGGTGCCACACTAATGGACTTGAAAAGGGCAACAACTTTGGCTTCAGTAACTGTCATGACTTTCATGCTGTCTGGAGGCTTTTTTGTGAAGAAAGTCCCTATATTTATATCTTGGATTCGCTACCTATCATTCAACTACCATACTTACAAGCTCTTGCTCAAGGTGCAATATGATCACATTACACCAACCATAAATGGAATCAGAATAGACAGTGGCTTAACAGAAGTGGTTGCTCTAGTAGCCATGGTTTTCGGTTACCGTTTATTGGCATATCTTTCTTTGCGACGGATGAAACTTCAAGCCTGA 2268 0.4065 MNMENANSSGLARTKSDQLVDLVVSALKSQSSGDSIGVVDGDGGGGSSMTRKSSWRMMGASPSRGGGGGGGSRKTHIRKTSSGVALSRASSSMDFSFSFTGFTLPPDEISDSKPFSDDDIPEDIEAGIHKPKFQAEPTLPIYLKFTDVAYKVVIKGMAKSEEKDILKGITGAVNPGEVLALMGPSGSGKTSLLNLIGGRLSHPTITGSISYNDQPYSKFLKSSVFVGFIPPILDMTGGVKRIGFVTQDDVLSPHLTVKETLTYAARLKLPKTLTRQQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCVGNEIIINPSLLFLDEPTSGLDSTTALKMVQMLHDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGNLLYFGKASEAMDYFQLIGCSPLIAMNPAEFLLDLANGNLNDVSVPSELEDKLLIGDTQAETRNGKPSPALVQEYLVESYESRVAEIEKKRLMVPTPLDEEMKSKVTCPKREWGASWFEQYSILFWRGIKERKHDYFSWLRITQVLSTAVILGLLWWQSHANNLKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERATDMYRLSAYFVARITSDLPLDLVLPILFLLVVYFMAGLRLSTGPFFLTILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLSGGFFVKKVPIFISWIRYLSFNYHTYKLLLKVQYDHITPTINGIRIDSGLTEVVALVAMVFGYRLLAYLSLRRMKLQA 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1720 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 400 IPR027417 -
Lal1g1720 755 CDD ABCG_EPDR 140 389 - -
Lal1g1720 755 Gene3D - 143 401 IPR027417 -
Lal1g1720 755 Pfam ABC transporter 166 335 IPR003439 GO:0005524
Lal1g1720 755 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 143 407 IPR003439 GO:0005524
Lal1g1720 755 Pfam ABC-2 type transporter 502 711 IPR013525 GO:0016020|GO:0140359
Lal1g1720 755 ProSitePatterns ABC transporters family signature. 307 321 IPR017871 GO:0005524
Lal1g1720 755 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 17 751 - -
Lal1g1720 755 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 17 751 - -
Lal1g1720 755 SMART AAA_5 175 384 IPR003593 -
Lal1g1720 755 MobiDBLite consensus disorder prediction 32 83 - -
Lal1g1720 755 Pfam ABC-2 type transporter 364 426 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1720 Lal-Chr1 19640146 19650582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1720 83 421 Calmodulin-binding Proteins AT2G36910 25.220 7.81e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1720 K05681 - gmx:100798801 1129.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1720 1 19640146 19650582 Lal1g1720 1 19640146 19650582 ECH
Lal1g1720 1 19640146 19650582 Lal13g1284 13 11535702 11549291 PCT
Lal13g1284 13 11535702 11549291 Lal1g1720 1 19640146 19650582 PCT