Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1708 ATGCCGGCTGGTCATGGTTTACGATCTCGAACCAGAGACTCATTCTCTCGAGCCTTCAGGAAGAAAGGAACCATCGCTCTAACCACATACCTACGAACCTATCACATCGGTGACTACGTTGACATCATCGTTAATGGTGCAATTCACAAAGGTATGCCTCACAAGTTCTACCATGGTCGCACCGGTCGCGTTTGGAACGTAACAAACCGCGCCATTAGCGTTGAGGTGAATAAACAAGTTGGTAACAGAATCATTGGGAAGATAATTCACGTGAGAATTGAGCATGTTAAGCCTTCAAGGTGCACTGAGGAGTTTCGTTTGAGGAAGAAGAATAATGATTTGTTGAAAGCTGAGGCTAAGGCTAAGGGTGTTGTTATTAGTACAAAGAGAAAGCCTGAAGGTCCTAAACTAGGGTTTATGGTTGAAGCTTCTACTTTGGAAACAGTTACTCCTATTCCATATGATGTTGTCAATGATCTTAAGGGAGGTTATTAG 495 0.4323 MPAGHGLRSRTRDSFSRAFRKKGTIALTTYLRTYHIGDYVDIIVNGAIHKGMPHKFYHGRTGRVWNVTNRAISVEVNKQVGNRIIGKIIHVRIEHVKPSRCTEEFRLRKKNNDLLKAEAKAKGVVISTKRKPEGPKLGFMVEASTLETVTPIPYDVVNDLKGGY 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1708 164 PANTHER 60S RIBOSOMAL PROTEIN L21-A-RELATED 1 164 - -
Lal1g1708 164 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Lal1g1708 164 Gene3D - 99 156 - -
Lal1g1708 164 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Lal1g1708 164 PANTHER 60S RIBOSOMAL PROTEIN L21 1 164 IPR001147 GO:0003735|GO:0005840|GO:0006412
Lal1g1708 164 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
Lal1g1708 164 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1708 Lal-Chr1 19538205 19538699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1708 1 164 Cytoplasmic Ribosomal Protein Gene Family AT1G57860 78.049 7.64e-97 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1708 K02889 - gmx:100305629 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1708 1 19538205 19538699 Lal1g1708 1 19538205 19538699 ECH
Lal11g1307 11 16711904 16713439 Lal1g1708 1 19538205 19538699 LSH