Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1707 ATGGAACAAGCTACACAAGTTTTAAGTGGATCCAATCAAAACGACGTCGTTCCACTCGAGTCAATTCAGTTCAACGAAGAAATCCAAGGAATTATGGCGCCGGAAAACGCTAGATCCTTCACCGCGCTGCTTGAGCTCCGACCGACGGAGGCTGTTGAGTTTTTCCACTCGCCAGGATCCTCAGTCGCCGCCGCTGCTCGGAAACCGCCTCTCGCGAACACGAAACCGTATAATTTGACCTTCCCTTCCAACTCCGGGTTGATTGAACGCGCCGCGAAGTTCTCAGTGTTTGCCGGAGAGAATTCATCGTCACCGGAGGAGGCGTGCTTGGTGGTTCCGGTCACTTCCGGTGATAGGGTGAAGAACGAGCCGCAAGAGATCGATTCGAACCCATGCTCCACGCAAGGTTGTGTTTCTGATCTTGCTGTTGAGAACAAGAATCAGAGGAACACGAAAAGGAAGGAGCGAGAGAAAAAGTTTAAACCTTCGTCGAAGAAGAGTAAGAGCGTCGCTGATGAGAACTCCGGTGACGGCGACAAGCTTCCGTACGTTCATGTTCGAGTTCGTCGAGGTCAAGCTACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGGGAGAAAATCAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACGGCATTAGTTCTGGATGAAATAATCAACCATGTGCAAAATCTACAACGCCAGGTTGAGTTCTTGTCAATGAAACTGGCCGCAGTTAACCCAATAATTGATTTCAGCCTTGACAGCTTATTGACTACAGATGGTGCATCTCTAGTTGACAGTAACTTACCTAGCATGCTTACACCTCTAATGTGGCCAGAAATCCCACAAATTGGTAGCAGACAGCATTATCAACAGCAATGGCAATATGATGCATTCCACCAACCACTTTGGGGAAGGGAAGAAGTGAACCATAATTTCATGACTACAGATAACTCACTTTTGAGTTATGACTCGTCGGCGAATTCAGCATCACTGCACTCAAATCAATTGAAGATGGAGCTTTGA 1059 0.4769 MEQATQVLSGSNQNDVVPLESIQFNEEIQGIMAPENARSFTALLELRPTEAVEFFHSPGSSVAAAARKPPLANTKPYNLTFPSNSGLIERAAKFSVFAGENSSSPEEACLVVPVTSGDRVKNEPQEIDSNPCSTQGCVSDLAVENKNQRNTKRKEREKKFKPSSKKSKSVADENSGDGDKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQNLQRQVEFLSMKLAAVNPIIDFSLDSLLTTDGASLVDSNLPSMLTPLMWPEIPQIGSRQHYQQQWQYDAFHQPLWGREEVNHNFMTTDNSLLSYDSSANSASLHSNQLKMEL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1707 352 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 19 352 - -
Lal1g1707 352 Coils Coil 232 252 - -
Lal1g1707 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 242 IPR011598 GO:0046983
Lal1g1707 352 Pfam Helix-loop-helix DNA-binding domain 196 243 IPR011598 GO:0046983
Lal1g1707 352 MobiDBLite consensus disorder prediction 143 183 - -
Lal1g1707 352 MobiDBLite consensus disorder prediction 162 183 - -
Lal1g1707 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 261 IPR036638 GO:0046983
Lal1g1707 352 CDD bHLH_AtBPE_like 182 267 - -
Lal1g1707 352 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 19 352 IPR024097 GO:0006355
Lal1g1707 352 SMART finulus 198 248 IPR011598 GO:0046983
Lal1g1707 352 Gene3D - 189 260 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1707 Lal-Chr1 19509930 19518093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1707 17 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.670 1.97e-95 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal1g1707 HLH 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1707 - - lang:109334778 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1707 1 19509930 19518093 Lal1g1707 1 19509930 19518093 ECH
Lal1g1707 1 19509930 19518093 Lal20g0237 20 1679558 1685060 LSH