Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1703 ATGGAGTCTCACGACGAGACAGGGTGCCAGGCACAAGAGCGTCCCATACTTTGCGTTAACAATTGTGGCTTCTTTGGAAGGGCTGCTACCATGAACATGTGTTCCAAGTGCTACAAGGACATGCTGCTAAAGCAGGAGCAGGACAAACTTGCTGCATCATCGGTTGAAAACATCGTGAACGGAACATCCAATGGAAACGGAAAACAGGTTGTGAAACAAGCGGCAGTTGATGTACAAGTTGAAACTGTGGAGGTCAAGACAATCTGCGCTGAGATTTCTGCTGATTCATCCTCTGGTGAGAGTTTGCAAAACAAAGCCAAGACAGGTCCCAGCAGATGCGCCACTTGCAAGAAGCGTGTCGGGTTAACAGGTTTCAGCTGCAAATGTGGAAACCTCTTTTGTGCAATGCATCGCTATTCTGATAAACATGATTGTCAATTTGATTATAGGACCGTCGGGCAGGATGCTATAGCTAAAGCCAACCCCGTAATTAAGGCAGATAAGCTTGACAAAATCTAG 519 0.4644 MESHDETGCQAQERPILCVNNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNGTSNGNGKQVVKQAAVDVQVETVEVKTICAEISADSSSGESLQNKAKTGPSRCATCKKRVGLTGFSCKCGNLFCAMHRYSDKHDCQFDYRTVGQDAIAKANPVIKADKLDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1703 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Lal1g1703 172 Gene3D - 88 168 IPR035896 -
Lal1g1703 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 172 - -
Lal1g1703 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Lal1g1703 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Lal1g1703 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Lal1g1703 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Lal1g1703 172 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 2 172 - -
Lal1g1703 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Lal1g1703 172 Gene3D - 1 61 - -
Lal1g1703 172 SUPERFAMILY AN1-like Zinc finger 103 167 IPR035896 -
Lal1g1703 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1703 Lal-Chr1 19482788 19483306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1703 5 172 C2H2 Transcription Factor Family AT3G52800 42.604 1.94e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1703 - - gmx:100499995 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1703 1 19482788 19483306 Lal1g1703 1 19482788 19483306 ECH
Lal1g1703 1 19482788 19483306 Lal2g0195 2 1161307 1163427 ECH
Lal1g1703 1 19482788 19483306 Lal9g0198 9 1248082 1250154 ECH
Lal1g1703 1 19482788 19483306 Lal25g0389 25 2621185 2621703 ECH
Lal1g1703 1 19482788 19483306 Lal10g1053 10 17558941 17559459 ECH