Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1700 ATGGATGACCCTTACTCTAATTTCCTCTCATCTTCTTCTTCATCTTTCTTCCAATTCAACCCTTTCCAATCTTCTCAAAAACCTCATCATCATCATCCTTATCTCCATAACTTCATCAACACAACAAAAAATGATACCACCTTTTCACACTTTCATCACTATCACAACTTTCAAACTCAAACTACTAACCCTCCTTCACCTCCTATTAGAGAAGAACTTCCTCTTTTGACCCTAAGCCCAGCAAAGCAAGAAGAGAATAATGATAATAGTATTCATGATGATGATGAAGAACAAGATCAACAAGAACCCCAACATCTCTCTTGCACTGCCATGGATGTGGAAGAGAGGATCTACCTTCACAAAGAGGAACAACAAAAAGAACATGATGATACCACTACTGTTACTGTTGCACTACATATAGGTTTACCAAACCCTAGTGCTGCTGAGATAGCATCTATGCTTTCTTCTAACAATTCTTCTTCAGAGATCAATGATAAAGATCAACATGGTGGTGATGTTAGTGAGGGTTCTTCTGGATTCATGCTCAACAATAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTCTTGTCCAGTTTGCTGCAAAACTTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGGCCAGAATCTCTAAGGGGTACTCAACCAACAGGAATGTTAAGGCTTCCATGCTATTGTTGTGCACCAGGGTGCAGGAACAACATTGATCATCCAAGAGCAAAGCCACTCAAAGATTTTAGAACACTTCAAACACATTACAAGAGGAAGCATGGGATTAAACCCTTCATGTGTAGAAAATGTTGCAAGGCTTTTGCTGTGAGAGGAGATTGGAGAACACATGAAAAAAATTGTGGGAAACTTTGGTATTGTATTTGTGGTTCTGATTTTAAGCACAAGAGGTCCCTTAAAGATCATATAAAAGCTTTTGGGAGTGGCCATGCAGCTTATGGGATTGATGGATTTGAAGAAGAAGAAGAAGATGAACCAGCTTCTGAAGTAGAACAAGATAATGATGAGTCCATTCAGTAA 1113 0.3953 MDDPYSNFLSSSSSSFFQFNPFQSSQKPHHHHPYLHNFINTTKNDTTFSHFHHYHNFQTQTTNPPSPPIREELPLLTLSPAKQEENNDNSIHDDDEEQDQQEPQHLSCTAMDVEERIYLHKEEQQKEHDDTTTVTVALHIGLPNPSAAEIASMLSSNNSSSEINDKDQHGGDVSEGSSGFMLNNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEDEPASEVEQDNDESIQ 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1700 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 233 IPR013087 -
Lal1g1700 370 ProSitePatterns Zinc finger C2H2 type domain signature. 208 228 IPR013087 -
Lal1g1700 370 SUPERFAMILY beta-beta-alpha zinc fingers 272 310 IPR036236 -
Lal1g1700 370 MobiDBLite consensus disorder prediction 156 177 - -
Lal1g1700 370 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 35 367 - -
Lal1g1700 370 Gene3D Classic Zinc Finger 267 344 - -
Lal1g1700 370 Gene3D Classic Zinc Finger 205 228 - -
Lal1g1700 370 PANTHER ZINC FINGER PROTEIN WIP2 35 367 IPR043584 GO:0003700|GO:0010468
Lal1g1700 370 MobiDBLite consensus disorder prediction 348 370 - -
Lal1g1700 370 MobiDBLite consensus disorder prediction 84 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1700 Lal-Chr1 19447748 19450702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1700 1 370 C2H2 Transcription Factor Family AT3G57670 59.413 1.52e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal1g1700 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1700 - - gmx:100802907 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1700 1 19447748 19450702 Lal1g1700 1 19447748 19450702 ECH
Lal1g1700 1 19447748 19450702 Lal25g0391 25 2631289 2634125 ECH
Lal1g1700 1 19447748 19450702 Lal10g1050 10 17541850 17544935 ECH
Lal11g1321 11 16807091 16809747 Lal1g1700 1 19447748 19450702 LSH
Lal1g1700 1 19447748 19450702 Lal20g0246 20 1743025 1745994 LSH