Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1696 ATGGAGAAAGATGGTCTCTTACAAGCTGAATCTCATGCCGATGAAAACATGTCGTGCGAGTTGGATCCGTTAAAGCAGCTAGCAACATCTCCAACGCTCTCTCCTAATTTGATAAGCTCATCGGAACCTAATAGCAACAAGATGAATCACTTGACTATTGATACCGAAGATTCTTTTGCAAGCTTGCTTGAGCTTGCAGCCAATAACGATGTTGAAGGTTTCAAACGATTGATTGAGTGTGATCCTTCCTCTGTAGATGAGGTTGGGGTATGGTATAGTCGTCGGAAGGGATCAAAACAAATGGTCAATGAGCAAAGAACTCCTTTGATGATTGCTGCTACTTATGGTAGCATTGAAATTATGAAAATGATTCTTTCACTATCCGATGCCGACATTAACTGCTCTTCTGGACTTGACAAGAGCACCGCCCTTCATTGTGCAGCATCTGGTGGGGCTGAAAATGCTGTTGATGCTGTGAAACTACTTCTGGCAGCAGGAGCTGATCCGAATTCGGTGGATGCCAATGGACATCGTCCAGCGGATGTTATTGTTTTCCCTCCCAGACTTCAATATGTCAAAAATAGTCTTGAACAACTTCTTCAAACTGATGACTCTGTTGCTGGCTGCAATCTGCGGGTGATTACAACCTCCTCATTCAATTCATATTCTCCACCTCTATCAAACTCACCAGAGAATGGGTCTCCTTCTGCATCGGATTTTCAATTGAAGTTGAAGTCAAATGATGTGCCTATTTCTTCTGCATCCGAGAAGAAAGAATATCCTATTGATCCTTCCCTTCCAGACATCAAGAACAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCTCGTGCTTATTCGCATGATTGGACTGAATGCCCTTTTGTCCATCCTGGGGAGAATGCTCGTAGAAGGGATCCAAGAAAGTACCATTACAGCTGTGTACCTTGTCCCGATTTTCGCAAGGGTGCTTGCCGTCGTGGAGATATGTGTGAATATGCTCATGGGGTTTTTGAGTGTTGGCTGCATCCAGCACAATATCGAACCCGCCTCTGCAAGGATGGGATAAATTGCTCCAGAAGAGTTTGTTTCTTTGCGCACACTGCTGAAGAGCTTCGACCGCTATATATTTCAACTGGTTCTGCTGTTCCCTCACCTCGCTCAAGCACATCTTCGGCGATGGATTTTGCTGCTGCCATGAGCATGTTGCCAGGCTCTCCTTCCTCAATGTCTGTCATGTCGCCTTCACCATTCACTCCACCTATGTCACCATCCGCTAATGGCATGCACTCTTCTGTTCCTTGGCCACAACCGAATGTCCCGGCCTTACATCTTCCAGGAAGCAATCTTCAGTCTAGCCGTTTGAGATCTTCACTCCATGCTAGAGATATTCCTATGGATGAGTTTGATTTGTTCTCTGATTATGATCAGCAACAACAGCTCCTAAATGAGTTATATTGTCTCTCTCCACAGCATCCTATGAATTCTAATAATCTGAACCGCTCGGGTCGAATGAAACCCCTGACTCCTTCAAATCTTGATGATCTCTTCTCTGCCGAGAGTTCTTCTCCTCGATTTGCCGATGGTTCACTGGCTTCAACTGTTTTTTCTCCAACACACAAATCAGCCGTCTTTAATCAGTTTCAGCAGCATCAAAGCATGTTGTCGCCTGTGAATTCCAACTTTTCTCCTAAAAATGTTGAGCATCCTTTGTTGCACAGCGCCTCCTTCGGGGTTCAGTCACCAGGAAGAATGTCCCCACGAAACATGGAACCTATTTCTCCGATGAACTCTAGGATGTCTATGCTAGCTCAACGCGAGAACCAGCAACAATTTCATAGCCTTAGCTCCCGGGATCTCGGCTCCAACTCTCCTACTGCTGCCTCAGCCAACTCTTGGTCAAGGTGGGGGTCCTCGAATGGTAGGGCAGATTGGGCAGCTGGTGCAGAGGAATTCAATAAGCATCACCGCAGATCATCTTCTTTCGAGCTCGGGAACAATGGCGAGGAGCCGGATTTATCATGGGTTCAGTCACTCGTCAAAGAATCTCCAACCGAGATTAAAAATGTCCCAACTGCTGCAGCAGCTGGATCCTCGAGCGAGGGGTCAAACGTAAGCGCATCGCAAATAGACTCTGCCGATCATGCTGTTTTGGGAGCATGGCTTGAACAAATACAGCTCGATCATCTCGTGGCTCAGCAAAACTAG 2229 0.4598 MEKDGLLQAESHADENMSCELDPLKQLATSPTLSPNLISSSEPNSNKMNHLTIDTEDSFASLLELAANNDVEGFKRLIECDPSSVDEVGVWYSRRKGSKQMVNEQRTPLMIAATYGSIEIMKMILSLSDADINCSSGLDKSTALHCAASGGAENAVDAVKLLLAAGADPNSVDANGHRPADVIVFPPRLQYVKNSLEQLLQTDDSVAGCNLRVITTSSFNSYSPPLSNSPENGSPSASDFQLKLKSNDVPISSASEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYISTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSANGMHSSVPWPQPNVPALHLPGSNLQSSRLRSSLHARDIPMDEFDLFSDYDQQQQLLNELYCLSPQHPMNSNNLNRSGRMKPLTPSNLDDLFSAESSSPRFADGSLASTVFSPTHKSAVFNQFQQHQSMLSPVNSNFSPKNVEHPLLHSASFGVQSPGRMSPRNMEPISPMNSRMSMLAQRENQQQFHSLSSRDLGSNSPTAASANSWSRWGSSNGRADWAAGAEEFNKHHRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKNVPTAAAAGSSSEGSNVSASQIDSADHAVLGAWLEQIQLDHLVAQQN 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1696 742 Gene3D - 34 194 IPR036770 -
Lal1g1696 742 MobiDBLite consensus disorder prediction 612 646 - -
Lal1g1696 742 ProSiteProfiles Ankyrin repeat region circular profile. 139 173 - -
Lal1g1696 742 PRINTS Ankyrin repeat signature 105 120 IPR002110 GO:0005515
Lal1g1696 742 PRINTS Ankyrin repeat signature 158 172 IPR002110 GO:0005515
Lal1g1696 742 Pfam Ankyrin repeats (3 copies) 65 173 IPR002110 GO:0005515
Lal1g1696 742 Gene3D - 319 381 - -
Lal1g1696 742 SMART c3hfinal6 318 344 IPR000571 GO:0046872
Lal1g1696 742 SMART c3hfinal6 353 376 IPR000571 GO:0046872
Lal1g1696 742 PANTHER UNKEMPT FAMILY MEMBER 48 739 IPR045234 -
Lal1g1696 742 ProSiteProfiles Zinc finger C3H1-type profile. 323 345 IPR000571 GO:0046872
Lal1g1696 742 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 48 739 - -
Lal1g1696 742 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 323 343 IPR000571 GO:0046872
Lal1g1696 742 ProSiteProfiles Ankyrin repeat profile. 139 174 IPR002110 GO:0005515
Lal1g1696 742 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lal1g1696 742 SMART ANK_2a 104 134 IPR002110 GO:0005515
Lal1g1696 742 SMART ANK_2a 139 171 IPR002110 GO:0005515
Lal1g1696 742 MobiDBLite consensus disorder prediction 612 647 - -
Lal1g1696 742 SUPERFAMILY Ankyrin repeat 59 187 IPR036770 -
Lal1g1696 742 MobiDBLite consensus disorder prediction 583 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1696 Lal-Chr1 19412205 19416055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1696 56 735 C2H2 Transcription Factor Family AT5G12850 52.766 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal1g1696 Ank_2 3.2e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1696 - - ccaj:109796653 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1696 1 19412205 19416055 Lal1g1696 1 19412205 19416055 ECH