LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g1685	ATGGAGGGAGTAAATAATAAAGGGTTGTTGGAATATGGTAGGAAGTGCACTCCACCACCCTTCTTGTTGAAGACTTACATGGTGGTGGAGGATCCGGCCACCGACGATGTCGTGTCGTGGAATAGCGAAGGGACGGCGTTCGTGGTGTGGCAACCGGCCGAGTTTGCTAGTGATATCCTCCCTACACTCTTCAAGCATAACAACTTCTCTAGCTTTGTCCGACAACTAAATACCTATGGTTTTCATAAAGTTGCAACAAGCAGATGGGAATTTTGCAACGAAAAGTTTAAGAAAGGTGAGAGAGAAATTCTAAGGGAAATCCGAAGGAGAAAAGCATGTAGCAGTAGTAAACAACAAAAGCAACAAGTTATAACAGCACCCCAAGATTCTGATGAAGATCAAAGATCTGCATCAACATCATCATCAAGTTCAGGATACACTACTCTCATTGATGAAAACAAGAGACTGAAGAAAGAGAATGGTGTGTTGAATTCTGAACTCACAAGCATGAACAACAAGTGTATGGAACTTCTTGATTTGGTGGCCAAATATAACAATAATGGAAAGAAGGAAGAGAAGAAAGAAGATGAAAGGACAATGCTGTTTGGAGTGAGAATGGATGTTGTTGAAGGAGAGATCAAGAAGTGGAATCATTTTGCTGTCTCAGCCATGCAAATAGATATATAG	687	0.4119	MEGVNNKGLLEYGRKCTPPPFLLKTYMVVEDPATDDVVSWNSEGTAFVVWQPAEFASDILPTLFKHNNFSSFVRQLNTYGFHKVATSRWEFCNEKFKKGEREILREIRRRKACSSSKQQKQQVITAPQDSDEDQRSASTSSSSSGYTTLIDENKRLKKENGVLNSELTSMNNKCMELLDLVAKYNNNGKKEEKKEDERTMLFGVRMDVVEGEIKKWNHFAVSAMQIDI	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g1685	228	Pfam	HSF-type DNA-binding	21	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal1g1685	228	SMART	hsfneu3	17	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal1g1685	228	SUPERFAMILY	"Winged helix" DNA-binding domain	17	110	IPR036390	-
	Lal1g1685	228	MobiDBLite	consensus disorder prediction	116	149	-	-
	Lal1g1685	228	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	219	IPR027725	-
	Lal1g1685	228	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR B-3	5	219	-	-
	Lal1g1685	228	Gene3D	-	13	111	IPR036388	-
	Lal1g1685	228	Coils	Coil	153	173	-	-
	Lal1g1685	228	MobiDBLite	consensus disorder prediction	110	149	-	-
	Lal1g1685	228	PRINTS	Heat shock factor (HSF) domain signature	21	44	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal1g1685	228	PRINTS	Heat shock factor (HSF) domain signature	59	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal1g1685	228	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal1g1685	228	ProSitePatterns	HSF-type DNA-binding domain signature.	60	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g1685	Lal-Chr1	19283925	19286950	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal1g1685	18	184	HSF	AT2G41690	58.011	1.08e-65	201

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lal1g1685		HSF_DNA-bind	9.6e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g1685	K09419		-	gmx:100802739	284.648