Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1677 ATGGATCACACAACTCTATTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCAGAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTAGGGCAATTGCGAATCACAGTAACGGGGATATACATGGAAGGGAGGTGAATTTGATAAAGAAGAGGAGGTGGTCTCAAAACAGTGACGACGGGACACACATGACTGAGGAGAGATATCGATCAATGCTGGGGGAGCATGTTCTGCAATACAGGAGGAGGGTTAAAGATACCTCTTCTAGTCCTGCCCAAAATCAGATTGCTGTTCCACTCCTCAGAAGCAATGCTGGCTTAAAAGCTCGCAAGTCTGGGAGTGAGCATAGGGAAGGATTACATGCTACAGAGACTTCATCTGAATGGATGAACGATTCCAATTCTAAGAAAGTGGGAAATCACCGTGATGCTGATTTCGTGCAGCGATATGGCACTGATAGGATTAACTATGAACCTGCTACTTTAGATATCGGAGATGGAATCACTTACAAGATTCCTCCAATTTATGATAAACTGGCAGCAATGCTGAACCTTCCAACCTTCACAGATATCCATCTCGAGGACTCTTACTTAAAGAGTACCTTGGATTTGGGCTCCTTGGCCGAAATGATGTCACCTGGTAAAAGGTTTGGGAATAAAAACCGAGCAGGCATGGGGGAAACCATATGCCAATATGAATCACTTCAGGCTCGACTGAAGGTTTATTATGTCAAGGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAACGAAGCCTACCTAAGAAGCAAAAGATAAAGAAAGACCCGGCTTTGATAGAGAAGGAGGAAATGGAAAGAATTGGAAAGGTTAAAATAAAAATTAATAGATCACTTAAGTGGCCGAGGACTGCTGGTATGCGCACCCGGAAACTTGCTAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAGGAGATGGAACGAATCATTAGAGAGAAAGTGGAGATAGCACCTATTGTAGAAAAAGATAAGAGGCAGAGGGAGACCAAGAAAGCTATAGGTGAAAATATTAAGAAGGAATTAGAGTTTAGTGGTTTGTCTATAGACATGATAGAAATATATAGGATTAGGAATGCAGAAGTGAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAAGAGCTTCGTGAAGCAAAGAGGCAGCAACAACGACTTAATTTTCTCATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTATCTTCAGAAGGCTTACCCATGGTAGATGAAAACGCAACTGATCAAGATGCACTGGTCGGTTCTTCAGATGCTGGACTTAACGAGGAGGAAGATCCCGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAGCAGAGAAGTTTGACAAATGCTTTTGACACTGAATGCTTGAGGCTGCGCCAGGTTGATGAATCTGATACACTTCAACCAGAAGTTGCTGGGGCAAGTAATATTGATTTGCAAACCCCCTCAACCATGCCAGTAGCTTCCACGGTTCAGACACCGGAATTATTTCAAGGTTGTCTCAAAGAATATCAGCTTAAAGGTCTTCAATGGCTAGTTAATTGTTATGAGCAGGCTTTTGGTATCTTACAGGGTTTAAATGGTATACTTGCTGATGAGATGGGGCTCGGAAAGACCATTCAGGCTATGGCTTTTTTAGCTCATTTAGCTGAGGAGAAGAACATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAACGAGGAACTTGAGCGCTTCTGCCCTGGACTTAGAAGACTTCCTTATTGGGGTGGGCTTTCAGAGCGAACAGTCCTTAGGAAAAGCATTAACCCTAAGGATCTTTACCGTAGGGAAGCTAAATTCCACATTCTCATTACAAGCTACCAGCTATTAGTATCTGATGAGAAGTATTTTCGCCGCGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGCGCAAACAGTATAAGATGGAAGACACTCCTCAGCTTTAATTGTCGGAATCGCCTACTGTTGACTGGTACACCTGTACAGAATAATATGGCAGAGCTATGGGCTCTTCTGCATTTCATTATGCCAACTTTATTTGACAGCCATGAGCAGTTTAACGAGTGGTTTTCAAGAGGGATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATAGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGACGTGTTAAAAAAGATGTAGTTTCTGAGCTGACTACAAAAACTGAGGTTACAGTGCATTGCAAGTTGAGTTCTCGGCAGCAGGCTTTTTATCAAGCAATTAAGAACAAGATATCTCTTGCGGAGCTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATCGTTATTCAACTAAGGAAGGTTTGCAATCATCCAGAATTATTTGAAAGAAGTGAGGGAACCACATACCTTTACTTTGGAAAGATTCCAAATTCCCTTCCACCTCCTCCGTTTGGGGAGTCGGAGGACGTATATTATTCTGGTGGTCACAACCCCATAACATATGAGATACCGAAACTTGTCTATCAAGAAATTTTGCATAGTTCTGAAGCTCTCAGTTCAGCTGTTGGCCGTGGTGTCAGCCAAGAATATTTTCAGAAACATTTTAATATTTTTACACCAGAAACTGTATATCGATCTATTTTCTCATATGATATGTATGTTAAAAGTGAAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCACAAGAGGTGACGTTTCTGGCTACCGGTTCTTTTATGGAGCGACTATTATTTTCTATGATGAGGTGGGAACAAAATCTTCTCGACGAAGTTGTAGAATTTCTTACAGAGACCATAGACGATGATCCAGAATGTAGTTACCTTGAGCAAGGAAAAGTGAGAGCTATCACACGTATGTTATTGGTGCCACCGAGATCTGAGACTAAGTTGCTACAAAGGAAATTTCCAATTGGGCCCTGCCATGCTCCTTCTGAGGCCTTGGTTGTCTCACATCAGGACAGGCTTTTATCAAATGCAAGGCTTCTTCACTCAGCTTACACATACATCCCACGGAGTAGAGCTCCCCCAATTGGTGCTCACTGCTCTGATAGAAACTTCTACTATAGAATGATTGAAGAGTTACATGATCCATGGGTTAAGAGATTATTTGTGGGATTTGCACGTACATCTGACTGTAATGGGCCTAGAAAGCCAGATAGTCCCCGTCATCATTTAATCGAAGAGATAGATTCTGAACTACCTCTTTCTCATCCCGCTCTTCAGTTGACGCACAGTATATTTGGGTCCTCTCCACCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGAAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGGGCAGGAAATCATCGGGTTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAATTACAGGAAATATAAGTATTTTAGACTTGACGGGTCTTCTACTATTCAGGACCGCAGAGACATGGTTAGAGACTTCCAGCATAGGTCGGATATCTTTGTGTTCTTATTGAGTACGAGAGCGGGTGGATTGGGTATCAACTTGACTGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCCCATCGTTTGGGTCAAACAAAAGATGTTACTGTTTACCGACTTATTTGTAAAGAAACAGTCGAAGAGAAGATTCTTCTTAGAGCGAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTCGGTGGCGATCTCTTAGCTCCTGAGGATGTGGTATCTTTGCTTCTGGATGATGTTCAGTTGCAGCAGAAATTAAAGCAAATCCCTCTCCAGGCAAAGGATAGGCAAAAGAAAAAACAACCTATGAAGGGTATTCGGGTAAATGAAGATGGCGATGCTTCTCTAGAAGATCTGACTAACTCTGTAGCCCAGGCTACACCAGATCATGATCTTTCCATGGAACCCGAAGGATCCAAGTCCGGTAATAATAAAAAGAGAAAGTCTGCCACAGATAAGCAAACTTCAAGATCAAAGAATTCTCAAAAGATGAATGAACACGGTATGATCGATGACGAATTGGATGATACCCACCTAACTACTGATCCAGTAAGCCAGAAACCCAAGAGACCAAAGAGAGCAAAGAAAAATGTCAATGAAAAGTTTGAAGATGGTTTTACTGGGACAGCCATTATAGTCCCAGAGCAGATCCAATTTCCACCACCGCGGGATTTCAGTGCCGGTGTTTCTAAAGCAGAATCTGGCCAAGACACCTGA 4482 0.4199 MDHTTLFNLESLMNFQLPEQDDDFDYYGNSSQDESRDSQGRAIANHSNGDIHGREVNLIKKRRWSQNSDDGTHMTEERYRSMLGEHVLQYRRRVKDTSSSPAQNQIAVPLLRSNAGLKARKSGSEHREGLHATETSSEWMNDSNSKKVGNHRDADFVQRYGTDRINYEPATLDIGDGITYKIPPIYDKLAAMLNLPTFTDIHLEDSYLKSTLDLGSLAEMMSPGKRFGNKNRAGMGETICQYESLQARLKVYYVKVLEKGDTYEIIERSLPKKQKIKKDPALIEKEEMERIGKVKIKINRSLKWPRTAGMRTRKLARDMLLFWKRIDKEMERIIREKVEIAPIVEKDKRQRETKKAIGENIKKELEFSGLSIDMIEIYRIRNAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSEGLPMVDENATDQDALVGSSDAGLNEEEDPEEAELKKEALKAAQEAVSKQRSLTNAFDTECLRLRQVDESDTLQPEVAGASNIDLQTPSTMPVASTVQTPELFQGCLKEYQLKGLQWLVNCYEQAFGILQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPGLRRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSRGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGTTYLYFGKIPNSLPPPPFGESEDVYYSGGHNPITYEIPKLVYQEILHSSEALSSAVGRGVSQEYFQKHFNIFTPETVYRSIFSYDMYVKSENFGFTHLMDLSPQEVTFLATGSFMERLLFSMMRWEQNLLDEVVEFLTETIDDDPECSYLEQGKVRAITRMLLVPPRSETKLLQRKFPIGPCHAPSEALVVSHQDRLLSNARLLHSAYTYIPRSRAPPIGAHCSDRNFYYRMIEELHDPWVKRLFVGFARTSDCNGPRKPDSPRHHLIEEIDSELPLSHPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKQIPLQAKDRQKKKQPMKGIRVNEDGDASLEDLTNSVAQATPDHDLSMEPEGSKSGNNKKRKSATDKQTSRSKNSQKMNEHGMIDDELDDTHLTTDPVSQKPKRPKRAKKNVNEKFEDGFTGTAIIVPEQIQFPPPRDFSAGVSKAESGQDT 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1677 1493 Pfam SNF2-related domain 546 851 IPR000330 GO:0005524|GO:0140658
Lal1g1677 1493 Gene3D - 1133 1380 IPR027417 -
Lal1g1677 1493 MobiDBLite consensus disorder prediction 120 146 - -
Lal1g1677 1493 SMART helicmild6 1194 1277 IPR001650 -
Lal1g1677 1493 MobiDBLite consensus disorder prediction 1347 1456 - -
Lal1g1677 1493 MobiDBLite consensus disorder prediction 23 49 - -
Lal1g1677 1493 Gene3D - 516 802 IPR038718 -
Lal1g1677 1493 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1168 1318 IPR001650 -
Lal1g1677 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 779 1350 IPR027417 -
Lal1g1677 1493 MobiDBLite consensus disorder prediction 1388 1409 - -
Lal1g1677 1493 Pfam DNA-binding domain 382 432 IPR020838 GO:0003677
Lal1g1677 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 526 777 IPR027417 -
Lal1g1677 1493 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 561 732 IPR014001 -
Lal1g1677 1493 ProSiteProfiles DBINO domain profile. 308 433 IPR020838 GO:0003677
Lal1g1677 1493 Coils Coil 380 419 - -
Lal1g1677 1493 MobiDBLite consensus disorder prediction 31 45 - -
Lal1g1677 1493 MobiDBLite consensus disorder prediction 1347 1369 - -
Lal1g1677 1493 Pfam Helicase conserved C-terminal domain 1168 1277 IPR001650 -
Lal1g1677 1493 CDD SF2_C_SNF 1156 1288 - -
Lal1g1677 1493 SMART ultradead3 539 740 IPR014001 -
Lal1g1677 1493 MobiDBLite consensus disorder prediction 1468 1493 - -
Lal1g1677 1493 MobiDBLite consensus disorder prediction 1419 1443 - -
Lal1g1677 1493 PANTHER CHROMATIN-REMODELING ATPASE INO80 264 355 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Lal1g1677 1493 PANTHER CHROMATIN-REMODELING ATPASE INO80 7 300 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Lal1g1677 1493 PANTHER CHROMATIN-REMODELING ATPASE INO80 385 1451 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Lal1g1677 1493 PANTHER HELICASE SRCAP-RELATED 7 300 - -
Lal1g1677 1493 PANTHER HELICASE SRCAP-RELATED 385 1451 - -
Lal1g1677 1493 PANTHER HELICASE SRCAP-RELATED 264 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1677 Lal-Chr1 19203935 19215974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1677 570 859 RAD5 or RAD16-like Gene Family AT5G43530 28.274 1.92e-25 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal1g1677 SNF2_N 2.1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1677 K11665 - gmx:100780615 2345.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1677 1 19203935 19215974 Lal1g1677 1 19203935 19215974 ECH
Lal1g1677 1 19203935 19215974 Lal20g0275 20 2019639 2030942 LSH