Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1660 ATGACCAAATCTAATTCTTCTAGTGAAAATAATGGATTGAAAAAAGGTCCTTGGACTCCAGAGGAAGATCAGAAACTTATTCATTATATTCAGCAACATGGGCATGGGAAATGGCGTATCCTTCCCAACAATGCAGGACTAAAGAGATGTGGAAAGAGTTGTAGGCTTCGTTGGGCAAATTATTTGAGGCCTGATATAAAGAGAGGAAAATTCTCATTGGAAGAAGAAAAAACCATCATAGAGTTACATAGTGTGATGGGAAACAAGTGGTCTACAATTGCTGCTAACTTACCTGGAAGAACAGATAATGAGATCAAGAATTATTGGAACACTCATATCAAGAAAAAGTTATTGAATTTGGGAATAGATCCAATGACTCACATGCCACACCATGAGGTTCTACAACACTCCCATATTCTAAACTTTTTATCTTCACCCCAATTGAATTATTCTTCTAGTCCTTTTGGAATTGGTAGTAGTAGTAATGTGGGAAATAATCAAAGCCAATTGCTAAGTTTACTCACAACTTTCTTATCATATCAAAATAGAGATCAAGATCTTATGAATCATAATTTCCACCAAAACCAAATTGGTATAAGTACTAGTAGCCCTCTATTGCAAAACCAATCCCAATGTTCCCATCCAATACAACTTAACTCTATCCAAAATTTCCAATCAAACCAAGTTCAAATTCAAGAAAATCACCAACTATGTGCTACATCAAATAATCCATTGGATATGGAATCCCAACTCATGAAAACAAAATTAAAGAACCAAATATCTCCAATTGGTGCTACTCCTTTTAGCCACCAAAATGATACAACTATACCAAATTTGTGGCAACATGAAGGAGGTTGTATTTCAGATCAACAACAACCACAATCAACATCGCCTATGCAAAGTTTCTCTATGCCCAAATTCAACTCCATTGTCAACAAATTGTTGGAAAATCAGATTTCATCAAGTAATAGTGAGGGAATGCCAAATTTCAATCAGTTTTAA 1002 0.3503 MTKSNSSSENNGLKKGPWTPEEDQKLIHYIQQHGHGKWRILPNNAGLKRCGKSCRLRWANYLRPDIKRGKFSLEEEKTIIELHSVMGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLNLGIDPMTHMPHHEVLQHSHILNFLSSPQLNYSSSPFGIGSSSNVGNNQSQLLSLLTTFLSYQNRDQDLMNHNFHQNQIGISTSSPLLQNQSQCSHPIQLNSIQNFQSNQVQIQENHQLCATSNNPLDMESQLMKTKLKNQISPIGATPFSHQNDTTIPNLWQHEGGCISDQQQPQSTSPMQSFSMPKFNSIVNKLLENQISSSNSEGMPNFNQF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1660 333 SMART sant 14 64 IPR001005 -
Lal1g1660 333 SMART sant 67 115 IPR001005 -
Lal1g1660 333 Gene3D - 14 67 - -
Lal1g1660 333 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 324 - -
Lal1g1660 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Lal1g1660 333 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Lal1g1660 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lal1g1660 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 324 - -
Lal1g1660 333 CDD SANT 70 113 IPR001005 -
Lal1g1660 333 MobiDBLite consensus disorder prediction 283 303 - -
Lal1g1660 333 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lal1g1660 333 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lal1g1660 333 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lal1g1660 333 CDD SANT 17 62 IPR001005 -
Lal1g1660 333 Gene3D - 70 117 - -
Lal1g1660 333 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1660 Lal-Chr1 19008975 19011620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1660 9 140 MYB Transcription Factor Family AT4G21440 75.758 4.00e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal1g1660 Myb_DNA-binding 5.5e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1660 1 19008975 19011620 Lal1g1660 1 19008975 19011620 ECH
Lal11g1393 11 17381147 17382792 Lal1g1660 1 19008975 19011620 LSH