Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1644 ATGGATCAAGAAATGGTAGACATTGAGTCTCAAGCTATTTGCAGAGCAACAGTGCTACAAGGAGCATCTCACATTTCTCGCAAGGAAAAATGTCCTATAATTCTTAAGTTTAATGATGTTGTGTACAAAATTAAGACCAAGAAAAGTGGACTATTTGAGAAGAACACAAAGGAAGAAGAGAAAGTGATACTGAAGGGTGCAACAGGAATTGTTGAACCTGGTGAAATGCTAGCAATGGTAGGCCCTTCTGGAAGTGGAAAAACAACTCTAATAACAGCTTTGGGAGGAAGACTTGGAGGGAAACTTTGTGGAACAATAACTTACAATGGACAACCTTTTTCAAATGCAATAAAAAGGAACACTGGTTTTGTTACACAAGATGATGTTCTATACCCTCATTTGACTGTTACTGAAACCTTAGTGTACACAGCACTTCTCAGATTACCAAATACTGTCACAGAAGAAGATAAAGTTTTGCATGCAAAATCTGTTATAGACCAACTTGGTTTAACACAGTGCAAAGACAACATGGTTGGAAGCCCTTATGTTAGAGGGGTTTCAGGGGGAGAGAGAAAAAGGGTTAGCATTGGACAAGAAATGCTCATAAACCCAAGTTTGTTGTTTCTTGATGAACCAACTTCTGGCCTTGATTCAACCACAGCACAAAGAATTGTGTCAACTTTGTGGGAGCTAGCATGTGGAGGAAGAACTATTGTGATGACAATACACCAACCTTCTAGCAGGTTATACTATATGTTTCATAAGGTTTTGGTGCTTTCTGAAGGGAATTCTTTGTACTTTGGAAAGGGATCTGAAGCCATTGATTACTTTTCCAGCATTGGGTTTGCCCCAGCACTGGCTATGAACCCTTCAGACTTCATTTTGGATCTTGCAAATGGTGTCTACACTAATGAATTGAATGAGGATCATCCCATAGATAAACAGCAATTGGTTTCAGCATATAAGATCAACATTGAAGCACAATTGAAGGCAGGACTTGAAGGAATAAGTGACTCTGGCAACAGAAATGAAGGTGAATTTCAAGACAGAGAGTTTGGAAAATGGCCAACAAGTTGGTCTCAGCAATTCTTTGTGCTTCTAAGAAGATACATCAAAGAGAAGAAGCATGAATCTTTTGCTACACTGCAGATTTGTCAAATCATTGTAACTGCTCTAATTGCAGGACTACTTTGGTATAAGTCTGATATATCACACTTGCAGGACCAGATTGGACTTCTATTCTTTATATGTGGGTTCTGGTCATATATCCCTCTCTATCAAGCAATTTTCACCTTCCCTCAAGAGGTAAAGATGCTAGAAAAAGAAAGATCTTCAGGAATGTATAGGCTCTCCTCATACTTCATGTCAAGGATTGTAGCTGAACTTCCTATGGATCTTGCTCTTCCTGCAATATTTATTCTCATAACATATTGGTTAACAGGGTTGAAACATAATATTATGAACTTCATATACACCCTATTGAGCCTCTTGTTGCATGTGTTAACATGTCAAGGTATAGGCCTTGCAATTGGTGCTATTGTCCTAGACCAAAAAACTGCAACAACATTTGCAACAATTCTCATGTTATGTTTCACTCAAGTTGCTGGATTTTATGTTCAGCATCTACCAAAATTTATGCACTGGATAAAGTACATTTCCAATGCATACTACACATTCCAGATCTTAATAGGGTCACAATATCACACTGGTGAGACATACCCTTGTTCTAGTGGTCAGTGCCTAATTGAAGAATATCCTGCCATAAGGGAAATGGGTTTTCCTGATTTACATAGGAAAACACTGGCTGCAATAGCCCTAGTGATAATGCTAATATTCTACAGGCTTATAGCTTATTTTGCTCTTATGAGGGTTGGACTGACAAAGAAATTGGTTTAA 1896 0.3829 MDQEMVDIESQAICRATVLQGASHISRKEKCPIILKFNDVVYKIKTKKSGLFEKNTKEEEKVILKGATGIVEPGEMLAMVGPSGSGKTTLITALGGRLGGKLCGTITYNGQPFSNAIKRNTGFVTQDDVLYPHLTVTETLVYTALLRLPNTVTEEDKVLHAKSVIDQLGLTQCKDNMVGSPYVRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELACGGRTIVMTIHQPSSRLYYMFHKVLVLSEGNSLYFGKGSEAIDYFSSIGFAPALAMNPSDFILDLANGVYTNELNEDHPIDKQQLVSAYKINIEAQLKAGLEGISDSGNRNEGEFQDREFGKWPTSWSQQFFVLLRRYIKEKKHESFATLQICQIIVTALIAGLLWYKSDISHLQDQIGLLFFICGFWSYIPLYQAIFTFPQEVKMLEKERSSGMYRLSSYFMSRIVAELPMDLALPAIFILITYWLTGLKHNIMNFIYTLLSLLLHVLTCQGIGLAIGAIVLDQKTATTFATILMLCFTQVAGFYVQHLPKFMHWIKYISNAYYTFQILIGSQYHTGETYPCSSGQCLIEEYPAIREMGFPDLHRKTLAAIALVIMLIFYRLIAYFALMRVGLTKKLV 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1644 631 CDD ABCG_EPDR 32 268 - -
Lal1g1644 631 Pfam ABC-2 type transporter 361 567 IPR013525 GO:0016020|GO:0140359
Lal1g1644 631 Pfam ABC transporter 65 214 IPR003439 GO:0005524
Lal1g1644 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 279 IPR027417 -
Lal1g1644 631 Gene3D - 52 279 IPR027417 -
Lal1g1644 631 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524
Lal1g1644 631 SMART AAA_5 73 263 IPR003593 -
Lal1g1644 631 Pfam ABC-2 type transporter 243 311 IPR043926 GO:0140359
Lal1g1644 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 286 IPR003439 GO:0005524
Lal1g1644 631 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 23 625 - -
Lal1g1644 631 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 23 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1644 Lal-Chr1 18851121 18854517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1644 74 262 Calmodulin-binding Proteins AT2G36910 28.205 6.17e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1644 K05681 - gmx:100816135 917.916