Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1643 ATGATCATGGAGAGCACAGACTCATCCATCGGTTCACAACAACAACAACCGAACCTACCACCCGGGTTCCGGTTCCACCCCACAGATGAGGAGCTCGTGGTTCAGTACCTGAAGAAGAAAATTACCTCAGCTCCTCTTCCACTTCACATCATCACTGAGGTTGATCTCTACAAGTTTGATCCATGGGAGCTACCAGCTAAGGCAGTGTTTGGGGAGAATGAATGGTATTTCTTCACTCCTAGGGATAGGAAGTATCCCAATGGTGCTAGGCCAAACAGGGCTACAACTTCTGGGTACTGGAAAGCCACAGGGACAGACAAACCTGTGTTAACAAGTGGTGGGACCCAAAAGGTTGGGGTGAAGAAAGCTTTGGTTTTCTATGGAGGGAAGCCACCAAGAGGGATCAAAACCAATTGGATCATGCATGAATATAGGCTTGCTCATAACAACCCTAACAATAGGCCTCTTGGTTGTGACTTGGGACACAAGAAAAATTCTCTTAGGCTTGATGATTGGGTACTATGCCGAATATACAAGAAGAACAATACACATAGGCCCCCTTTGGAACATGACAAGGAAGATTCAATGAATGAGAGGTTTCATCTTTCAAAAATGCCCACAAGCTATAGTAATGCATTGTTGCAAAATGACCAAAACTTATTGGAAGGAATGGTCTTAAATAATGGTTTGGGGTCATCAAGCTCTAAGGCAAAGCTTCCTTTTGTGTCAACCATCGCCAGATCGACAAACACCACTACTAATTATGCGCCATCCAAAAGAACATTCTCATCTCTGTATTGGAATGACGATCAAGATGTGGCGGTAGCAGGAACCTCGTCAACAAACAAAAGGTTTAGTTCGGAAAATGGCGAACATGAAGAGAATAATGACAATTCAAACTCTTTTGCAACTCTCCTTAATCAACAACTCCCTCAAACCTCTTCATTGCATCAACAACAAACATTGATTGGATCATTAAGTGATGGAATACTTAGAACAACACCATATCAAATAGGTGGAATGAATTGGTATACTTAG 1038 0.4268 MIMESTDSSIGSQQQQPNLPPGFRFHPTDEELVVQYLKKKITSAPLPLHIITEVDLYKFDPWELPAKAVFGENEWYFFTPRDRKYPNGARPNRATTSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLAHNNPNNRPLGCDLGHKKNSLRLDDWVLCRIYKKNNTHRPPLEHDKEDSMNERFHLSKMPTSYSNALLQNDQNLLEGMVLNNGLGSSSSKAKLPFVSTIARSTNTTTNYAPSKRTFSSLYWNDDQDVAVAGTSSTNKRFSSENGEHEENNDNSNSFATLLNQQLPQTSSLHQQQTLIGSLSDGILRTTPYQIGGMNWYT 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1643 345 MobiDBLite consensus disorder prediction 1 24 - -
Lal1g1643 345 SUPERFAMILY NAC domain 12 180 IPR036093 GO:0003677|GO:0006355
Lal1g1643 345 ProSiteProfiles NAC domain profile. 19 180 IPR003441 GO:0003677|GO:0006355
Lal1g1643 345 PANTHER NAC TRANSCRIPTION FACTOR 56 3 318 - -
Lal1g1643 345 MobiDBLite consensus disorder prediction 1 21 - -
Lal1g1643 345 Gene3D NAC domain 28 185 IPR036093 GO:0003677|GO:0006355
Lal1g1643 345 MobiDBLite consensus disorder prediction 279 299 - -
Lal1g1643 345 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Lal1g1643 345 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 3 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1643 Lal-Chr1 18825076 18828631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1643 3 345 NAC Transcription Factor Family AT3G15510 53.421 1.08e-115 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal1g1643 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1643 - - vra:106763825 496.123