Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1622 ATGTTAATCGGCAGAGAAGTAGAGGATTTATGTGATGATAACTTTGAGGGATCTAATGAAGAAAGACAGATTTTTGCAGAGGCCTTTTCTTGTAGTGAGTTTTTTCAATCCAGTCAGAGGTGTCTTGATGCCGGAGTTATCAACTTCGATTGTGAATCCAATAAAAAAACATTGAAATCATTCTGCTCTAGCAATGAAAACACAGCTGTAATGCGACCCTCGTTTTCAAGACTCACGAATCCTGATGAGGACCTTAACGTAATTCAGCTTTCCAAAGAGACTGCTCCAGGGTGTATGCCAGAGAGTTTGATTTGTGATGACCAGAATGACGATGATATGAATGTCAAACGTATAAAATTTTCTCTACAAGAACTTCCTTGTAGTAGATCTGATTCAGGAAATGATTTGAGCTTATCCGGACTTTCAAAAGATATAATTTCTAACCTATCTTGTGCTGCTACAGACTGTGATAGTGAACCATTTGCATTTTGTTTAGTTGAATCGTCGAAGCATGGTGTGATATCTAGTCAATATCTTTTGAAGGATAACTTGTTACAGAATAAAGAAGATGCCAAGGATGATGTAGATGTTATAAATTGTAAATCAATAACTGCAGATGGGAATGTTGCAAAAGAGGTGTCTGTAAGTAAAGTGGCCGCTTCTCCGATTTCCCAGGAGAGCTTTGCAAACAAGCTTGTAGTTACAAATCCTTTATCTTCTGAAACGGAAATCTCAAATTCATCCTCAAAGCTAGATCAAAAGGATCCTCGTACTTCATTGCATTTTAATATTGTGCAGCTACTTACGTCAGCTGGATGGTCTATTGAGAAGCGTCATCGACCTAGTAGGCGTTACATGGAGTCAGTTTATAGGACACCGAAGGGAAAACCTGTTCGGGAATTTACGAAAGCTTGGAGATTATGTGGTCAGCTATTGTCTGTTGAAAAAAGCAATTTAATGTATGAAGATCTGAAGGAATGGACTAATGTTAGTCAATTCTGGTCTGATTTATCCAGTGCACTGATAACTGTTGAAAAAACAAGGAATCAATTAGAGCCTGCTGCTATGTTGGCTTATCAATGGTGGCTTCTGGATCCTTTTGTAGTAGTCATATTTCTTGATAGAAAGATTGGTGCCTTGAAAAAGGGAGAGATAGTGAAAGCCACTTGGAGTTTAGTTTCTAGCAAGTATAAGATGGCAGGTGCTCTAATGGAGTCAACTCGGGAGGATACTTCTGGTGCTCCTTTTGATCAGAACCATGACCAAGCCTTTCTCTGTGATTATTCTACCGGAATTGCAAGCCCTATTCCACAGTCCAAATGTAGTGATGAAGAGGGCAGAAAAATCTCAGTAGCTTCTGAAGTTGAGCCAGATAACACATCTTCTGCCACCAATGTTCTTAAAAAGAAAATGCAGAGAAAATGCAAAGGGGTTTCTGAAATCAATTTGAGTATGTCATACTATAGTGACATGCTGGGATCAACTTTTATTGACCCGGTGCAGCCACTGCATAGTGATGCATGTGACAATCAGTTATCATTGGAAGAGGACCAAGATTATCTACTTGACAGTGCCGGAAAGAAAAGAAGTTGCATGAAGTTATCATCTGTCAATGCATTTGAACAAAATATTAGGAAATCAAATCACTCCATAACTGGAACGAACAAATCCAACAAATGCCTGATTCAAGATGATGATTTATTGGTTTTAGCAATATTCAGAAACAAGGACTTCAGCCCAAAGACAATACGAGATAGTTGTAGAGGTAAATCCTGCAAATCAAGAGTCCGAAGAAAGCTTAAAAGCAAAAAGGGTCATTGCAGGTTGCTACCAAGGAACATTTGTAATGGAGGGAAGCACAATAAGGACGGCAAGTGGTATTATTTGAGGGCAAGGACAGTCTTGTCCTGGTTGATTGAGAATGGGATCATATGTTTAAATGATGTGATTCAATACCGAAGCCCTAAAGATAATGCTGTAATTAAAGATGGTAGGATTACCAAAAATGGCATTGTTTGTAAATGTTGTGGTAAGCTGCATACATTATCAGAGTTCAAGTTTCATGCTGGCTTCACATTGAATCGCCCCTGCTTGAATCTTTTCATGGGGTCTGGTGAGCCATTTTCACTGTGCCTCCTTCAAGCTTGGTCAGATGAATACAAAGCAAGGAAAAGTCAGAATCAAGTTGTTAAAGTTGATAATGATGATCGAAATGACGATTCATGCGGATTGTGTGGTGAGGGGGGTGAGCTGATATGTTGTGATAGCTGCCCATCTACATTTCACCTGACTTGTTTGTCCACTCAGGAGATCCCTGATGGCAATTGGTACTGCATGTACTGTACTTGTCGAATATGTGGATATTTGATCATTGATAAAGAGGCTTCAGATGCTTATGATTCATTGCAATGTGCACAGTGTGAACATAAATATCATGATAAATGCCTGAGAGAAAGAGGTCAACAAGTGACAGTATCAGACATTTGGTTTTGTGGTCAGAGATGTCAGGAGGTATACTCTGGTCTCCAATCTCAGATGGGGTTAGTTAATCAAGCTGCGGATGGCTTCTCATGGATGCTTCTTAAATGCATCCATGACGACCAAAAGTGTCTTTCTTCCCAGTGGTTTGCCCTAAAGGCCATATGCAATACAAAATTAGCTGTTGCTCTTACCATCATGGAGGAGTGTTTTTTGTCGATGTTGGATCCGAGAACAGGCATACACATGATACCCCAAGTTTTATACAATTGGGGGTCTGATTTTGCTCGTCTAAATTTTCAAGGGTTTTACACTGTTGTGTTGGAGAAACAGGATGTGTTAATATCCGTAGCATCTGTAAGGGTGCATGGAACCACAGTTGCAGAGATGCCTCTAATTGCAACTTGCAGTCAGTATCGTCGTCAGGGAAAGTGTCGACTACTCGTGAGTACAATTGAAGAGATGTTAATATCTATCAAGGTAGAGAAGCTTGTGATAGCAGCCATTCCAGATTTGGTGGAGACATGGACCAAAGGGTTTGGGTTCATGCCTGTAGATGACATCGAAAAGAAAAGATTGAAGAAAATCAACTTGATGGTTTTCCCTGGGACGGTGTTACTTGAAAAACCCTTGTACCAGGAGAAAACTGAAGCAATAGATGAAACTATGGCAGTAGGTATCATCTCCGAAGGCATGGCCGTGGCTGAATCATTGTTAGAAGATGTTGGAAACTTATCTACCGACAAAGTTGGCGTTGAGTCAGAATGGGTACCTGTGGATGGTGAGAATCACGTAGACTGCGAAGCTGGCAGTGAAACCATCAGAAACGATAGCGAGAAGCAAAATGCAAATGATAATGAGCAAATAATCCAGTTAACAGTGTCAGGTGGCTTAGTCAAATCTATTGAAGGAAACAACATGCAGGAATCTGGAACGAGTAAGGAAATGGAAATGGTGAGTGAGTCGGCAGCAATCGAGTGA 3459 0.4027 MLIGREVEDLCDDNFEGSNEERQIFAEAFSCSEFFQSSQRCLDAGVINFDCESNKKTLKSFCSSNENTAVMRPSFSRLTNPDEDLNVIQLSKETAPGCMPESLICDDQNDDDMNVKRIKFSLQELPCSRSDSGNDLSLSGLSKDIISNLSCAATDCDSEPFAFCLVESSKHGVISSQYLLKDNLLQNKEDAKDDVDVINCKSITADGNVAKEVSVSKVAASPISQESFANKLVVTNPLSSETEISNSSSKLDQKDPRTSLHFNIVQLLTSAGWSIEKRHRPSRRYMESVYRTPKGKPVREFTKAWRLCGQLLSVEKSNLMYEDLKEWTNVSQFWSDLSSALITVEKTRNQLEPAAMLAYQWWLLDPFVVVIFLDRKIGALKKGEIVKATWSLVSSKYKMAGALMESTREDTSGAPFDQNHDQAFLCDYSTGIASPIPQSKCSDEEGRKISVASEVEPDNTSSATNVLKKKMQRKCKGVSEINLSMSYYSDMLGSTFIDPVQPLHSDACDNQLSLEEDQDYLLDSAGKKRSCMKLSSVNAFEQNIRKSNHSITGTNKSNKCLIQDDDLLVLAIFRNKDFSPKTIRDSCRGKSCKSRVRRKLKSKKGHCRLLPRNICNGGKHNKDGKWYYLRARTVLSWLIENGIICLNDVIQYRSPKDNAVIKDGRITKNGIVCKCCGKLHTLSEFKFHAGFTLNRPCLNLFMGSGEPFSLCLLQAWSDEYKARKSQNQVVKVDNDDRNDDSCGLCGEGGELICCDSCPSTFHLTCLSTQEIPDGNWYCMYCTCRICGYLIIDKEASDAYDSLQCAQCEHKYHDKCLRERGQQVTVSDIWFCGQRCQEVYSGLQSQMGLVNQAADGFSWMLLKCIHDDQKCLSSQWFALKAICNTKLAVALTIMEECFLSMLDPRTGIHMIPQVLYNWGSDFARLNFQGFYTVVLEKQDVLISVASVRVHGTTVAEMPLIATCSQYRRQGKCRLLVSTIEEMLISIKVEKLVIAAIPDLVETWTKGFGFMPVDDIEKKRLKKINLMVFPGTVLLEKPLYQEKTEAIDETMAVGIISEGMAVAESLLEDVGNLSTDKVGVESEWVPVDGENHVDCEAGSETIRNDSEKQNANDNEQIIQLTVSGGLVKSIEGNNMQESGTSKEMEMVSESAAIE 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1622 1152 ProSiteProfiles Zinc finger PHD-type profile. 739 784 IPR019787 -
Lal1g1622 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 732 784 IPR013083 -
Lal1g1622 1152 SMART PHD_3 741 782 IPR001965 -
Lal1g1622 1152 SMART PHD_3 783 836 IPR001965 -
Lal1g1622 1152 PANTHER PHD FINGER PROTEIN 12 1 416 IPR042163 GO:0003714|GO:0045892
Lal1g1622 1152 PANTHER PHD FINGER PROTEIN 12 453 1130 IPR042163 GO:0003714|GO:0045892
Lal1g1622 1152 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 889 1014 IPR016181 -
Lal1g1622 1152 SUPERFAMILY FYVE/PHD zinc finger 735 787 IPR011011 -
Lal1g1622 1152 Pfam Tify domain binding domain 664 714 IPR032308 -
Lal1g1622 1152 PANTHER INCREASED DNA METHYLATION 1 453 1130 - -
Lal1g1622 1152 PANTHER INCREASED DNA METHYLATION 1 1 416 - -
Lal1g1622 1152 MobiDBLite consensus disorder prediction 1130 1152 - -
Lal1g1622 1152 Pfam PHD-finger 742 783 IPR019787 -
Lal1g1622 1152 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 891 1038 IPR000182 GO:0016407
Lal1g1622 1152 Coils Coil 181 201 - -
Lal1g1622 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 838 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1622 Lal-Chr1 18638331 18648171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1622 1 1039 PHD Transcription Factor Family AT3G14980 41.290 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal1g1622 TDBD 9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1622 - - lang:109334132 1895.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1622 1 18638331 18648171 Lal1g1622 1 18638331 18648171 ECH
Lal11g1460 11 17898784 17907627 Lal1g1622 1 18638331 18648171 LSH