Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1617 ATGTCTTTAAGGAAGGTCTTTCGCTCTCGCAAATTATCCAAATCCTTCAAAGTAACCACCCCTTTTGACACCTCACCCGCCGGAGACAGAGAATCCGGCGAGGAACCGCCGCAATGTAACGACTGGTCCACTTTGCTGCCGGAGCTTCTCCGAGAGATTATAAGGCGCGTGGACGTCACCGAGGAGCAGTGGCCACACCGACAAAACGTCGTCGCTTGCGCCTGTGTTTGCAAGCGGTGGAGAAACATCACGCGCGAGATTGTGCGTTCACCTTCTCATAAAGGCACAATCACTTTTCCCTCTTGCCTTAAACAGGCAGGACCACATGACCTTCCCCACCAATGCTTTATAAAGCGGAACAAGAAAACCTCAACGTTTTACCTCTACCTTGCCCTTACATCATCATTCACAGATAAAGGGAAGTTTCTATTAGCGGGTAGAAGATATAGACGTGGTACACACACCGAGTATATAATATCACTTGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGATCGGATTTTCTCGCAACCAACTTCAAAGTTTATGACAGCCAGCCTCCCCATAGTGGGGCAAAACCATCAAGTGGAAGGTCCACCCGTCGTTTTGACAGCAAGCAAATAAGCCCTGAAGTTCCTGCAGGCAACTTCGAGGTGGGGAAGCTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGGATGGTCTGCTCACTGAAGTGTCCCGTCTCATCACCACCACCATCATCGTCCGGAGAAAGTTCAGATAGCATATCTCCAGATGGCCATAAGACTCACAGTAATAGAGAACATGGCTACTCGATCTTGAAGAACAAAGCTCCAAGGTGGCATGAACATTTGCAGTGCTGGTGTTTGAATTTCCACGGTCGCGTGACCGTAGCATCGGTCAAGAACTTTCAGCTTGTAGCTACTGTGGATCAAAGCCAACCTGGAGGGAAAGGAGATGAGGAAACAGTTCTACTTCAGTTTGGGAAAGTAGGGGATGATACCTTTACCATGGATTATAGGCAGCCCTTATCTGCCTTTCAGGCTTTTGCTATTTGCTTGAGTAGCTTTGGCACTAAACTGGCATGTGAATAA 1125 0.4764 MSLRKVFRSRKLSKSFKVTTPFDTSPAGDRESGEEPPQCNDWSTLLPELLREIIRRVDVTEEQWPHRQNVVACACVCKRWRNITREIVRSPSHKGTITFPSCLKQAGPHDLPHQCFIKRNKKTSTFYLYLALTSSFTDKGKFLLAGRRYRRGTHTEYIISLDADDLSQGSNAYVGKLRSDFLATNFKVYDSQPPHSGAKPSSGRSTRRFDSKQISPEVPAGNFEVGKLSYKFNLLKSRGPRRMVCSLKCPVSSPPPSSSGESSDSISPDGHKTHSNREHGYSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLSSFGTKLACE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1617 374 MobiDBLite consensus disorder prediction 251 266 - -
Lal1g1617 374 SUPERFAMILY Tubby C-terminal domain-like 91 374 IPR025659 -
Lal1g1617 374 SUPERFAMILY F-box domain 33 85 IPR036047 GO:0005515
Lal1g1617 374 ProSitePatterns Tub family signature 1. 302 315 IPR018066 -
Lal1g1617 374 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 29 374 - -
Lal1g1617 374 MobiDBLite consensus disorder prediction 192 209 - -
Lal1g1617 374 MobiDBLite consensus disorder prediction 18 39 - -
Lal1g1617 374 Pfam Tub family 103 369 IPR000007 -
Lal1g1617 374 ProSitePatterns Tub family signature 2. 359 374 IPR018066 -
Lal1g1617 374 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Lal1g1617 374 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Lal1g1617 374 PRINTS Tubby superfamily signature 222 249 IPR000007 -
Lal1g1617 374 PRINTS Tubby superfamily signature 284 301 IPR000007 -
Lal1g1617 374 PRINTS Tubby superfamily signature 302 318 IPR000007 -
Lal1g1617 374 PRINTS Tubby superfamily signature 331 350 IPR000007 -
Lal1g1617 374 PRINTS Tubby superfamily signature 352 374 IPR000007 -
Lal1g1617 374 Gene3D Tubby Protein; Chain A 98 374 IPR025659 -
Lal1g1617 374 MobiDBLite consensus disorder prediction 246 278 - -
Lal1g1617 374 Gene3D - 36 92 - -
Lal1g1617 374 MobiDBLite consensus disorder prediction 192 213 - -
Lal1g1617 374 Pfam F-box domain 42 89 IPR001810 GO:0005515
Lal1g1617 374 PANTHER TUBBY-RELATED 29 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1617 Lal-Chr1 18584878 18588952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1617 1 374 TUB Transcription Factor Family AT1G53320 71.466 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal1g1617 Tub 2.7e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1617 K19600 - gmx:100808096 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1617 1 18584878 18588952 Lal1g1617 1 18584878 18588952 ECH
Lal20g0377 20 3017808 3022012 Lal1g1617 1 18584878 18588952 LSH