Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1606 ATGCAGGGAATTCTATCAGATGGGACAATAATAGCAGTGAAGCAACTTGCTTCAAAGTCAAAGCAAGGGAATCGTGAATTTTTAAATGAAATTGGCATGATTTCTGCATTGCAACACCCATATCTTGTTAAACTCTATGGTTGTTGTGTTGAGAGAGATCAACTATTGTTGGTATATGAATATGTTGAAAACAATAGCCTTGCTCGTGCCTTATTTGGCCCAGAAGAACATCAAATAAAATTGGATTGGCCCACAAGGCACAAAATCTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGATTGTTCATAGGGACATCAAGAGCACTAATGTATTGATTGATAAAGATCTTAACCCTAAGATATCTGACTTTGGTTTAGCCAGACTTGATGAAGAGGAAAACACTCATATTACCACTCGAATCGCTGGGACATATATAATTTGGTTGGATTGTGAGCAAAAAAGAAGTGGATATATGGCTCCAGAATATGCCATGCATGGATATTTAACAGATAAAGCAGATGTCTATAGTTTTGGAGTTGTTGCCTTGGAAATCGTAAGTGGGAAAAACAATATCTATCGCCGACAAAATGAAAAATCACTTCATCTTCTTGAGTGGATTAATGACGAAAGGGATAAAAATATAGTAAGATTTATCTAA 681 0.3642 MQGILSDGTIIAVKQLASKSKQGNREFLNEIGMISALQHPYLVKLYGCCVERDQLLLVYEYVENNSLARALFGPEEHQIKLDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKSTNVLIDKDLNPKISDFGLARLDEEENTHITTRIAGTYIIWLDCEQKRSGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGKNNIYRRQNEKSLHLLEWINDERDKNIVRFI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1606 226 Gene3D Phosphorylase Kinase; domain 1 1 62 - -
Lal1g1606 226 SMART serkin_6 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1606 226 Gene3D Transferase(Phosphotransferase) domain 1 63 226 - -
Lal1g1606 226 SUPERFAMILY Protein kinase-like (PK-like) 3 208 IPR011009 -
Lal1g1606 226 PIRSF ILK 6 216 - -
Lal1g1606 226 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1606 226 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 218 - -
Lal1g1606 226 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 218 - -
Lal1g1606 226 Pfam Protein tyrosine and serine/threonine kinase 9 211 IPR001245 GO:0004672|GO:0006468
Lal1g1606 226 ProSitePatterns Serine/Threonine protein kinases active-site signature. 108 120 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1606 Lal-Chr1 18445791 18447412 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1606 2 221 Receptor kinase-like Gene Family AT1G53420 72.727 2.99e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal1g1606 PK_Tyr_Ser-Thr 1.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1606 - - cam:101501658 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1606 1 18445791 18447412 Lal1g1606 1 18445791 18447412 ECH
Lal20g0395 20 3164970 3174898 Lal1g1606 1 18445791 18447412 LSH