Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1596 ATGAAGATTCAGTGCAACGTGTGTGAAGTTGCAGAGGCTAAGGTTCTTTGTTGTGCTGATGAAGCAGCGTTGTGTTGGGAATGTGATGAGAAGGTTCATGCTGCTAACAAGCTTGCTAACAAGCATCAAAGAGTTTCTCTTTCTATGTCTTCTTCTCATATGCCAAAATGTGATATTTGTCAGGAAGCATTTGGCTATTTCTTCTGTCTAGAGGATCGGGCTTTACTATGCCGAAAGTGTGATTTGGCAATACACACTGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTCGAAGCTACTGACCCTGGTGCTTCATCAAGTTCATTGAAATCAGACTCCGGGGAGAAAGTTTCCGATACAAAGTCTTCTTCTATCGGTAGAAAGGTTTCAACAATGCCTCATTCATCAGATTACAATGAAGTGGTACCTACTGAAGTTGGAAGAGTTGAGGAGTTTCCACCAGCTAAGGTGTCTTATGGTGGTGGTTCTACTGTTGGCAACATGTCACAATGGTCCTTCGACGAATTTCTCGGCCTGAATGAATTCAGCCAGAGCTATAATTACATGGAAGGATCATCAAAGGCTGAGAATGGCGAACTTGAGGATTCCGATTCACCGGTTTTAAGATCCATTGAAGAGGAAATGGACGAAGAAGACTACTTGGGGCATGTTCTAGATTCATCATGGACAGTTCCTCAAATCCCTTCACCTCCTACAGATTCAGGACTATATTGGCCAAAACTCCTTCAATATTCATCTGATACTGCAATGTTTGTTCCAGACAAATGCTTTTCCCACAACATGCAACAATCTCAAAATAGTGCTATTTTTTCAAGAAGGAAGAGGCATCTTTAA 882 0.4206 MKIQCNVCEVAEAKVLCCADEAALCWECDEKVHAANKLANKHQRVSLSMSSSHMPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATDPGASSSSLKSDSGEKVSDTKSSSIGRKVSTMPHSSDYNEVVPTEVGRVEEFPPAKVSYGGGSTVGNMSQWSFDEFLGLNEFSQSYNYMEGSSKAENGELEDSDSPVLRSIEEEMDEEDYLGHVLDSSWTVPQIPSPPTDSGLYWPKLLQYSSDTAMFVPDKCFSHNMQQSQNSAIFSRRKRHL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1596 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lal1g1596 293 MobiDBLite consensus disorder prediction 110 147 - -
Lal1g1596 293 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Lal1g1596 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal1g1596 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lal1g1596 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lal1g1596 293 Gene3D Classic Zinc Finger 1 92 - -
Lal1g1596 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 292 - -
Lal1g1596 293 CDD Bbox1_BBX-like 5 47 - -
Lal1g1596 293 MobiDBLite consensus disorder prediction 110 149 - -
Lal1g1596 293 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 292 - -
Lal1g1596 293 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1596 Lal-Chr1 18359938 18363149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1596 1 291 C2C2-CO-like Transcription Factor Family AT1G78600 47.416 2.81e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal1g1596 zf-B_box 9.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1596 - - gmx:100790959 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1596 1 18359938 18363149 Lal1g1596 1 18359938 18363149 ECH