Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1564 ATGGCATCTTCATTGAGCCTAAAACCAACTCTTTTCACTTCTGAGAAATCCTTAGTTAGAGGGCTTCCCTCACTTTCTAGGACATCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGATTAAGACTGATAAGCCTCTTGGAATTGGTGGTGGCATGAACTTGAGGGATGGAGTTGATGCATCTGGAAGAAAAGGAAAGGGAAAGGGTGTATACCAGTATGTCGACAAATACGGTGCTAATGTTGATGGCTACAGTCCTATCTACAACCCTGAGGAATGGTCTCCAACTGGTGATGTCTATGCTGGTGGTGCCACTGGTTTGGCTATATGGGCTGTAACTCTAGCTGGTCTTCTTGCCGGTGGTGCACTTCTTGTCTACAACACAAGTGCTTTGGCACAATAG 405 0.4519 MASSLSLKPTLFTSEKSLVRGLPSLSRTSSFKVVASGVKKIKTDKPLGIGGGMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYNPEEWSPTGDVYAGGATGLAIWAVTLAGLLAGGALLVYNTSALAQ 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1564 134 Pfam Photosystem II 10 kDa polypeptide PsbR 36 133 IPR006814 GO:0009523|GO:0009654|GO:0015979|GO:0042651
Lal1g1564 134 PANTHER PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC 1 134 IPR006814 GO:0009523|GO:0009654|GO:0015979|GO:0042651
Lal1g1564 134 PANTHER BNAANNG27100D PROTEIN 1 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1564 Lal-Chr1 18001042 18004007 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1564 K03541 - pvy:116139892 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1564 1 18001042 18004007 Lal1g1564 1 18001042 18004007 ECH