Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1534 ATGATCCCCATTTCCAAGATAAAACCTCTCAGGAGGAGAAGGAATTTGAATAACTCTTTCTCTTCTTCTCAAACAATTCCTTTACCATCAGATCCATATAAGGAACAGCAGCAAGTGAAGGAAGAAAGTGGTGTTGTTGCAGAGGGAAAAAATCCTGATTTGCGGACACTTTTTAGAAGGTTCTGGAAGGTGGCAGCTCCTTATTGGACTTCAGATGACAAGGTCCAAGCTAGGTTGCGGCTTGCTGGTGTTTTTGCTCTCACTCTGGCTACCACTGGAATCAGTGTTGTCTTCAATTTCCTGGCAAGAGATTTTTATAACGCACTATCCAATAAGGACCAAGAACAATTCACAAGGCAACTACTTTACTACGTGGGCGCCTTTGCTGTAGGAATCCCGTTTTTTGTTTTGAGAGATTATGCAAGAGACTCCCTTTCTTTGAGATGGAGGTCTTGGATGACGAGATATTACATGGATTGCTATCTTAGGGATCATAATTTCTATAAAATTCAGTCACAGTCAATCATTGATAATCCAGACCAGCGAATTGTTGATGATCTAAGTTCTTTCACCGGGACTGCCCTTTCTTTATCCCTGAAACTCTTCAATGCAGTTGTAGACTTAATCACTTTCAGTAACATCTTATATGGAATCTATCGTCCTCTATTTTTTGTTCTTATAGTATACTCCATTGGTGGGACAACTATTAGTGTTTTCCTTGGAAAGGGACTGGTAAACTTAAATTTCCTGCAAGAGAAAAAAGAAGCAGACTTTCGTTATGGGCTTGTACGGATTCGGGAAAATTCTGAATCGATTGCTTTCTATGGTGGTGAAGAAAGTGAAATGCAACTTCTTCTGCAGCGCTTCAGTAGTGCTTTTGAGAATTTGAGTAAAATGTTGATTTCTTCTAGAAACCTGGAGTTCTTCACCGATAGCTACCGCTATGTCATTCGAATTCTTCCTGCTGCTGTTGTTGCTCCCATGTACTTCTCTGGAAAAATTGAATTTGGTGTCATCAGTCAGTCAGTCTCTGCTTTTAATCATATCCTTGGTGACTTTTCCCTCATTGTGTACCAATTTCAAGCAATAACTGCTTTTTCTGCTGTTCTTAACCGGCTCGGTGAATTTGATGATGTTTTGGACAGGAGCAGCTCTAAATCTCTCTCCGATACTTTAGAAGATATACATATTGCATACAATAACTGTAGGAGTTCATCTGTATTGGAATCTAATGGATCCATGCTACCAGAGAAATATGAGACATTGCTAGAGATAGAAAATTTGACTCTGAAGACACCATGTGAATCTACCCTTATTAGGGACTTGTCTTTGATTATCAAGGATAATGATAATTTACTGGTGATGGGACCAAGCGGAAGCGGTAAGACTTCTCTCTTAAGAGCTATGGCTGGTCTATTGAAAACCGGAACTGGAAAGATCATGTACTACGTAAAAGACGGAGAAGATCCTAAGCAATCCATGTGTTCAGATGTGAATTATTATCATGATGCATATGAAGAACATGGAAAATTGATAGGCAAAAGATCCCAAATATTTTTCCTACCTCAAAGGCCATATATGGTTTTGGGTACTCTTTGTCAACAATTACTCTATCCAAGATGGACTGATGGCACAGTTCCGAGATCAGATAGTTCTAAGCCAATAAATACGCTTCCTTTCTTGGCAAACTTGTCAAACTCAGATCACATGAAAGATAAGCCTACGAAGCCAACAACAGATGAGCTGATAAAAGTTTTAGAGGATGTCCATCTTGGCTATTTGTTGGCTCGTTTCAGTTTAGATTCGACACATGAATGGTCTAGTGTTCTTTCTCTGGGAGAGCAGCAACGCCTTGCGTTTGCTCGACTTTTGCTTTCAAAACCTCAATTGGTTTTATTGGATGAATCTACAAGTGCACTTGATGAAGCCAATGAGGTTCATTTGTACAATAAGATTGGCGAAGCAGGCATAACATACATCAGTGTCGGCCATCGATCAACCTTACGTAATTACCACAACAGGATCTTATGTATATCAACAGTGGATGCTAAAACTGAACAGCCAAATTGGTGCATTGAATACACTAGACATGAATCTTCTCTAAAAAATACAAATCTAGCATTTTAG 2127 0.3935 MIPISKIKPLRRRRNLNNSFSSSQTIPLPSDPYKEQQQVKEESGVVAEGKNPDLRTLFRRFWKVAAPYWTSDDKVQARLRLAGVFALTLATTGISVVFNFLARDFYNALSNKDQEQFTRQLLYYVGAFAVGIPFFVLRDYARDSLSLRWRSWMTRYYMDCYLRDHNFYKIQSQSIIDNPDQRIVDDLSSFTGTALSLSLKLFNAVVDLITFSNILYGIYRPLFFVLIVYSIGGTTISVFLGKGLVNLNFLQEKKEADFRYGLVRIRENSESIAFYGGEESEMQLLLQRFSSAFENLSKMLISSRNLEFFTDSYRYVIRILPAAVVAPMYFSGKIEFGVISQSVSAFNHILGDFSLIVYQFQAITAFSAVLNRLGEFDDVLDRSSSKSLSDTLEDIHIAYNNCRSSSVLESNGSMLPEKYETLLEIENLTLKTPCESTLIRDLSLIIKDNDNLLVMGPSGSGKTSLLRAMAGLLKTGTGKIMYYVKDGEDPKQSMCSDVNYYHDAYEEHGKLIGKRSQIFFLPQRPYMVLGTLCQQLLYPRWTDGTVPRSDSSKPINTLPFLANLSNSDHMKDKPTKPTTDELIKVLEDVHLGYLLARFSLDSTHEWSSVLSLGEQQRLAFARLLLSKPQLVLLDESTSALDEANEVHLYNKIGEAGITYISVGHRSTLRNYHNRILCISTVDAKTEQPNWCIEYTRHESSLKNTNLAF 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1534 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 679 IPR027417 -
Lal1g1534 708 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 423 705 IPR003439 GO:0005524
Lal1g1534 708 Gene3D ABC transporter type 1, transmembrane domain 38 379 IPR036640 GO:0005524|GO:0016021
Lal1g1534 708 MobiDBLite consensus disorder prediction 19 45 - -
Lal1g1534 708 SUPERFAMILY ABC transporter transmembrane region 59 376 IPR036640 GO:0005524|GO:0016021
Lal1g1534 708 PANTHER ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 3 40 692 - -
Lal1g1534 708 Pfam ABC transporter 440 638 IPR003439 GO:0005524
Lal1g1534 708 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 40 692 - -
Lal1g1534 708 Gene3D - 415 705 IPR027417 -
Lal1g1534 708 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 82 365 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal1g1534 708 SMART AAA_5 448 682 IPR003593 -
Lal1g1534 708 ProSitePatterns ABC transporters family signature. 610 624 IPR017871 GO:0005524
Lal1g1534 708 CDD ABCD_peroxisomal_ALDP 423 676 - -
Lal1g1534 708 Pfam ABC transporter transmembrane region 2 73 330 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1534 Lal-Chr1 17513674 17526646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1534 5 701 Acyl Lipid Metabolism Gene Families AT1G54350 62.731 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1534 - - lja:Lj3g3v0937780.2 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1534 1 17513674 17526646 Lal1g1534 1 17513674 17526646 ECH