Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1527 ATGATATCAGCAAGGTTTCTTGTTCTTGTTGGAGAGTCATTGCCCTTAAGAAGGGCTTTGGTCTCTTCTAGGAATGCTTGGTTTCATAGCAGTTTTCATTGTAAGGGTCAGGTCGAAACCCGAAATGGTTCCCTTTCCCTTTCAAGTATTGGTTTCAAAAGTGAAATTGAACCCAAAGACAAAGTCCAATCAGATAAAGTTGTTAAGCCATTGGGTTCCTCTTCGGAATCCGTCAAGAAAAAGGGAAAAATTGGTGTCATCAATGAGAAAAAGGCTGTTCAAGTTAGACAGAAACAATCGGCAGAGTTTGCTCCGTTTGCTGCAAATTCATTTTCAGAACTTGGAGTCCCGCAGGTATTGATTGAGAGGCTAGAAAATGTCGGGTTCAATGTTCCGACCGATGTTCAGTCTGCTGCGATTCCTACCATCCTGAAGAACCATGATGTGATAATTCAGTCTTATACGGGTTCAGGGAAAACATTGGCTTATTTGCTTCCTATACTCTCAGCTATCGGCCCGCTAAGGAATAGAGATCTTGAAGGTAATGGTGGTGATGGTGGGAAGAACGGCGGAGTAGAAGCGGTTGTTGTTGCTCCCTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGATACTAGGAATGGAAAACAAGAAAGTAGTTCAGCAGCTCGTGGGAGGTGCGAATCGTACTAGGCAGGAAGAAGCTCTTAAGAAAAATAAACCTGCCATTGTTGTTGGCACACCTGGTAAGATAGCGGAGCTCAGTGCATCTGGGAAACTCCGTACTCACGGCTGTCGTTATTTGGTATTAGATGAAGTTGACGAACTCCTTTCGTTCAATTTCCGTGAGGACATGCACCGGATAATTGACCACGTAGGGAGGAGAGCAGGTGCAGGTGCAGACCCAAGTTCTAAAAGGATCGAGCGTCAATTAATTATGGTATCTGCAACTGTGCCATTTTCTGTCGTAAGGGCAGCTCGGAGCTGGGGTCGTGAGCCACTTCTTGTCCAAGCTAAGAATGTTGTCCCACTTGAATCTATCCCTCCTCCTAAGCCTGTCATTCTGTCGGAGTCTTCATCCGGCCCAAGTTCTAAGCCAACTATGCCATCTCAGGCATCAGTAGAGAGCCTACCTCCCGGATTGAAACACTATTACAGTGTAGCGAGGTTGCAGCACAAAGTTGATACCTTGAGAAAGTGTATTCATGCATTGGATGCCAAATATGTAATAGCTTTCATGAACCACACAAAGCAGCTAAAGGATGTGGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCTGCAGAGTTACACGGGGATCTTGGGAAGCTTGCTAGGTCGACAACTCTGAAGAAATTCAAGAACGGTGAAGTGAGAGTTCTGGTGACAAACGAATTGTCAGCAAGGGGCCTGGATGTGCCAGAATGTGATCTTGTGGTTAATATCGGCTTACCCACAGATTCAACTCACTATGCACACCGAGCCGGCCGAACTGGTCGTCTTGGTAGGAAAGGTACAGTGCTTACCATATGCGAAGAGCCGGAATTGTTTGTCGTAAAGAAAATGCAGAAGCAGCTTGGAATACCGATAGCATGCTGTGATTTTACTGATGGAAAGCTGCTTGTCACCAAAGAAGAGAAAACACTCAGCACTTCCACATGA 1668 0.458 MISARFLVLVGESLPLRRALVSSRNAWFHSSFHCKGQVETRNGSLSLSSIGFKSEIEPKDKVQSDKVVKPLGSSSESVKKKGKIGVINEKKAVQVRQKQSAEFAPFAANSFSELGVPQVLIERLENVGFNVPTDVQSAAIPTILKNHDVIIQSYTGSGKTLAYLLPILSAIGPLRNRDLEGNGGDGGKNGGVEAVVVAPSRELGMQIVREFEKILGMENKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGKIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRIIDHVGRRAGAGADPSSKRIERQLIMVSATVPFSVVRAARSWGREPLLVQAKNVVPLESIPPPKPVILSESSSGPSSKPTMPSQASVESLPPGLKHYYSVARLQHKVDTLRKCIHALDAKYVIAFMNHTKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVPECDLVVNIGLPTDSTHYAHRAGRTGRLGRKGTVLTICEEPELFVVKKMQKQLGIPIACCDFTDGKLLVTKEEKTLSTST 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1527 555 Gene3D - 381 538 IPR027417 -
Lal1g1527 555 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 339 IPR014001 -
Lal1g1527 555 CDD DEADc 120 340 - -
Lal1g1527 555 Pfam DEAD/DEAH box helicase 133 325 IPR011545 GO:0003676|GO:0005524
Lal1g1527 555 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 543 IPR001650 -
Lal1g1527 555 Gene3D - 57 341 IPR027417 -
Lal1g1527 555 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 23 532 - -
Lal1g1527 555 Pfam Helicase conserved C-terminal domain 398 504 IPR001650 -
Lal1g1527 555 SMART helicmild6 423 504 IPR001650 -
Lal1g1527 555 CDD SF2_C_DEAD 386 513 - -
Lal1g1527 555 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 23 532 - -
Lal1g1527 555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 524 IPR027417 -
Lal1g1527 555 SMART ultradead3 128 357 IPR014001 -
Lal1g1527 555 MobiDBLite consensus disorder prediction 359 377 - -
Lal1g1527 555 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 109 137 IPR014014 GO:0003724
Lal1g1527 555 MobiDBLite consensus disorder prediction 355 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1527 Lal-Chr1 17443336 17445003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1527 109 532 Eukaryotic Initiation Factors Gene Family AT3G19760 24.000 2.83e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1527 - - gmx:100812968 802.742