Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1498 ATGTCCTACAGGGTTTGCAAGTTCTATGCCCGTGGAACATGTTTGAAAGGGGAGCAATGTGATTTTGTCCATGAGAGAAAGGATTCACCATCTGATATTTGCTCATTCTTTCAGAAAGGATCCTGTGCTTATGGTAGTCGATGCAGATATAAGCATCTCAAAGCTTCCCAAGCATCATCTTCTGTGTCATCTTCAGAAAATGGACACCAACCTTTGGCTTCAGATTCTCCCACTACTAAAGGAACATCAAGTTGGATTCCAAAAACTACGAAATTGTCTTCACCTGACAAGCGTGCAAGGAATTCACAATGCAAGAACCAGATCTCCATGGGGCATGGTGATGTTGTTGAATCCAGTACTCGAGGTGCTATACCATTTCAACATTTATTTTGTCAATTTGCTGCTGCTGCCTGCCCCCTAGGAGATAAATGTCTCAGTATGCATGGAAATCAATGCTTATATTGTAGAAAACATTGTTTGCATCCAACTGATCGAAAGGAAAAAGAAAATCATTTGAGGACTTGTGAGAAAAAGAAAAAATACCTTCAGGCTTTGAGAATTAGTCAAGAAATAGAATGCAATGTTTGTCTCGACCGTGTTCTTTCCAAACCTACACTAGCTGAATGTAAGTTTGGGGTGCTTCCTGAATGCAACCATGCTTTCTGTTTATCATGTATCCGCAATTGGCGGAATAGTGCTCCAGTCTCTGGATTTGAGCAGAGTAATAATGCTAATACAGTGAGAACCTGCCCTGTTTGCCGCAAACTGTCATATTTTGTCATTCCAAGTGATATTTGGTATTCTACAAATGAAGAAAAACAGGAAATTATTGACAACTACAAGGCAAACTGCAGGTTGATTGATTGCAAACATTTCAACTTTGGAAATGGGAACTGCCCATTTGGGAATAGTTGTTTCTACAAGCATCCCGTGAAGCCTGGCTCATACACATGGATACATAACAGACCACCATCTCAACGCAGACCAAACAATTATGATATGTATGACATGTTGGATATGCTCAGCGAAGTTGATTTATCAAGCGGGGAGCTTTACTCCATCATGAGGGACTCGGAGTTTTTTGATGATATGGATCCATTCGAGATGATGGCTATATCAGATGCAATGGGCACTGGGGATGGTCCTTGTCTGGGTCCTTTTGATTCTGATGATGATGAAGTAGACATGGATTTTTTCCCAATGGCTACTTTGTCAGAGGCATTGGCTTCTGGTGTGGACGACTTCGGCCCTGAAGATTTTGACAACGGAGAAATAGATCTTATGGAGGCAGCAATGCTTTCAATGATGATACATTCTAATATTGAAGAAGAGGAAGAAGACAGTGATGAAGAGTACTAG 1359 0.4099 MSYRVCKFYARGTCLKGEQCDFVHERKDSPSDICSFFQKGSCAYGSRCRYKHLKASQASSSVSSSENGHQPLASDSPTTKGTSSWIPKTTKLSSPDKRARNSQCKNQISMGHGDVVESSTRGAIPFQHLFCQFAAAACPLGDKCLSMHGNQCLYCRKHCLHPTDRKEKENHLRTCEKKKKYLQALRISQEIECNVCLDRVLSKPTLAECKFGVLPECNHAFCLSCIRNWRNSAPVSGFEQSNNANTVRTCPVCRKLSYFVIPSDIWYSTNEEKQEIIDNYKANCRLIDCKHFNFGNGNCPFGNSCFYKHPVKPGSYTWIHNRPPSQRRPNNYDMYDMLDMLSEVDLSSGELYSIMRDSEFFDDMDPFEMMAISDAMGTGDGPCLGPFDSDDDEVDMDFFPMATLSEALASGVDDFGPEDFDNGEIDLMEAAMLSMMIHSNIEEEEEDSDEEY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1498 452 Pfam Zinc finger, C3HC4 type (RING finger) 193 253 IPR018957 GO:0046872
Lal1g1498 452 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Lal1g1498 452 SMART ring_2 193 253 IPR001841 -
Lal1g1498 452 ProSiteProfiles Zinc finger C3H1-type profile. 283 312 IPR000571 GO:0046872
Lal1g1498 452 Gene3D - 2 68 - -
Lal1g1498 452 Pfam Zinc-finger containing family 5 64 IPR041686 -
Lal1g1498 452 ProSiteProfiles Zinc finger RING-type profile. 193 254 IPR001841 -
Lal1g1498 452 SUPERFAMILY CCCH zinc finger 30 52 IPR036855 GO:0046872
Lal1g1498 452 PANTHER MAKORIN-RELATED 1 452 IPR045072 -
Lal1g1498 452 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Lal1g1498 452 SMART c3hfinal6 125 150 IPR000571 GO:0046872
Lal1g1498 452 SMART c3hfinal6 29 54 IPR000571 GO:0046872
Lal1g1498 452 SMART c3hfinal6 283 311 IPR000571 GO:0046872
Lal1g1498 452 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Lal1g1498 452 MobiDBLite consensus disorder prediction 60 104 - -
Lal1g1498 452 Pfam RNA-binding, Nab2-type zinc finger 288 310 - -
Lal1g1498 452 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 452 - -
Lal1g1498 452 CDD RING-HC_MKRN 193 254 - -
Lal1g1498 452 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Lal1g1498 452 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Lal1g1498 452 SUPERFAMILY RING/U-box 181 260 - -
Lal1g1498 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 285 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1498 Lal-Chr1 16999669 17011626 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal1g1498 zf-C3HC4 1.3e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1498 K15687 - gmx:100788886 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1498 1 16999669 17011626 Lal1g1498 1 16999669 17011626 ECH