Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1492 GTACTTTGTAAGTTCTTTGCAAATGGAGCATGTTTGAAAGGGGAACATTGTGAATTTTCTCATGACTGGAAAGTTCCGTCAAATAATGTTAGTAATGCAAGCTCTTCTGTGCTTCAGATATGCACCTTTTATCAGAAAGGAGCTTGTTCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGATTACCATCCTCCACTCCATCGTCTTCAGTAACCGAACGCCAACCTGTGGTTTTGGATTCTGTTGTATTTGCTAATACTATAATTACATCAAATGGTGTTGGTACAGCTGCAGACGTTTCTCCTTCTGGAGGTCCGTACCTTCTTCCCTCTCAACCAGCCTGGATTCAAGAATCTGAGTATCAAGATTTTTTGGGGGAAGATGATGTTGGTCAATCCAGAATTACTTCACCTTCTGAGCTTTCAATATGCTCATTTGCTGCTGCTGGAAGCTGTCCACGAGGGGAAAAATGTCCTCATATTCATGGAGATCTGTGTCCCACCTGTCGAAAGCACTGCTTACACCCTTTCCGACCCGATGAACGAGAAGAACATATGAAGAGTTGTGAAAATAGGCAAAAGCATCTTGAGGCCTTGAAAAGAAGTCAAGAAATTGAATGCAGTGTTTGTCTGGAGCGTGTTCTTTCAAAGCCTACGGCAGCTGAGCGTAAGTTTGGGGTTCTATCTGAATGTGACCATCCATTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACACTGGGGATGGATGTCAATAGCACACTGAGGGCTTGTCCTATCTGTCGCAAGCTATCATATTTTGTCATTCCAAGTGTAATTTGGTACTCTACAAGTGAAGAAAAGCATGAAATCATTGACAGCTACAAGGCAAAGCTCAAGTCAATCGATTGCAAGCATTTTGACTTTGGCGATGGGAACTGCCCTTTTGGAACTAGCTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTCGAGGAGGTAGTTCTGAGACATCTTGGGGCTGCAGATGGGGATACAGTAATTGCTAAAGAAATCAGGCTGGCGGATTTCCTTGCTAATATGCATTTAAGATGA 1092 0.4304 VLCKFFANGACLKGEHCEFSHDWKVPSNNVSNASSSVLQICTFYQKGACSYGSRCRYDHVKASRLPSSTPSSSVTERQPVVLDSVVFANTIITSNGVGTAADVSPSGGPYLLPSQPAWIQESEYQDFLGEDDVGQSRITSPSELSICSFAAAGSCPRGEKCPHIHGDLCPTCRKHCLHPFRPDEREEHMKSCENRQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGVLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTSEEKHEIIDSYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRLEEVVLRHLGAADGDTVIAKEIRLADFLANMHLR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1492 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 273 IPR013083 -
Lal1g1492 363 Pfam CCCH-type zinc finger 2 22 IPR041367 -
Lal1g1492 363 Pfam CCCH-type zinc finger 40 59 IPR041367 -
Lal1g1492 363 ProSiteProfiles Zinc finger RING-type profile. 210 268 IPR001841 -
Lal1g1492 363 CDD RING-HC_MKRN 210 268 - -
Lal1g1492 363 ProSitePatterns Zinc finger RING-type signature. 234 243 IPR017907 -
Lal1g1492 363 SMART c3hfinal6 35 61 IPR000571 GO:0046872
Lal1g1492 363 SMART c3hfinal6 297 325 IPR000571 GO:0046872
Lal1g1492 363 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Lal1g1492 363 SMART c3hfinal6 1 23 IPR000571 GO:0046872
Lal1g1492 363 Pfam Zinc finger, C3HC4 type (RING finger) 210 267 IPR018957 GO:0046872
Lal1g1492 363 SMART ring_2 210 267 IPR001841 -
Lal1g1492 363 ProSiteProfiles Zinc finger C3H1-type profile. 35 62 IPR000571 GO:0046872
Lal1g1492 363 SUPERFAMILY RING/U-box 199 274 - -
Lal1g1492 363 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Lal1g1492 363 PANTHER MAKORIN-RELATED 1 363 IPR045072 -
Lal1g1492 363 Pfam RNA-binding, Nab2-type zinc finger 302 324 - -
Lal1g1492 363 Gene3D - 1 75 - -
Lal1g1492 363 SUPERFAMILY CCCH zinc finger 2 22 IPR036855 GO:0046872
Lal1g1492 363 SUPERFAMILY CCCH zinc finger 38 59 IPR036855 GO:0046872
Lal1g1492 363 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE 1 363 - -
Lal1g1492 363 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Lal1g1492 363 ProSiteProfiles Zinc finger C3H1-type profile. 297 326 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1492 Lal-Chr1 16946321 16952124 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal1g1492 zf-C3HC4 4.3e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1492 K15687 - gmx:100787817 615.535