Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1488 ATGGCTCAGAAAACAGAACAAGAAGAAACTGAATTCAAAGTTCCCGAAACTATTACCCCATGCGTCAATAACTGCGGTATCACCGGCAACCCCACCACCAAAAACATCTGCCAAAACTGCTTCCCCGCCGCAACAACCACCACCTCTTCCACCGCAACATCGCCTCCTTCTAGACCCCTCACCGGAAACACCACCTCTCCTTCCCTGAAAAGATCTTATACGCCGGATCCTCGTAGTCCCGACGAAACAACGCCGTCCGAGGCGAAGCGTGTCGTGAACCGGTGCTCTGGTTGTCGGAGGAAGGTTGGACTCACCGGATTCCGATGCCGGTGCGGCGAGGTTTTTTGCTCCGAGCATCGGTACTCTGATCGGCATAACTGTAGCTATGATTATAAAGCTGCTGGTAAAGAAGCTATTGCTAGGGAAAATCCTTTGATCAGAGCTTCGAAGATCGTTAAGATTATATATAGAAAAAGTTAG 480 0.4979 MAQKTEQEETEFKVPETITPCVNNCGITGNPTTKNICQNCFPAATTTTSSTATSPPSRPLTGNTTSPSLKRSYTPDPRSPDETTPSEAKRVVNRCSGCRRKVGLTGFRCRCGEVFCSEHRYSDRHNCSYDYKAAGKEAIARENPLIRASKIVKIIYRKS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1488 159 Gene3D - 69 150 IPR035896 -
Lal1g1488 159 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Lal1g1488 159 Pfam AN1-like Zinc finger 95 132 IPR000058 GO:0008270
Lal1g1488 159 ProSiteProfiles Zinc finger AN1-type profile. 89 135 IPR000058 GO:0008270
Lal1g1488 159 MobiDBLite consensus disorder prediction 47 81 - -
Lal1g1488 159 MobiDBLite consensus disorder prediction 47 88 - -
Lal1g1488 159 PANTHER AN1-LIKE ZINC FINGER PROTEIN 1 154 - -
Lal1g1488 159 Pfam A20-like zinc finger 20 41 IPR002653 GO:0003677|GO:0008270
Lal1g1488 159 Gene3D - 1 66 - -
Lal1g1488 159 SUPERFAMILY AN1-like Zinc finger 79 149 IPR035896 -
Lal1g1488 159 SMART AN1_Zf_4 95 132 IPR000058 GO:0008270
Lal1g1488 159 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 154 - -
Lal1g1488 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1488 Lal-Chr1 16886739 16887360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1488 8 154 C2H2 Transcription Factor Family AT3G52800 37.278 4.56e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1488 - - var:108333085 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1488 1 16886739 16887360 Lal20g0632 20 5815451 5815921 ECH
Lal1g1488 1 16886739 16887360 Lal1g1488 1 16886739 16887360 ECH
Lal20g0632 20 5815451 5815921 Lal1g1488 1 16886739 16887360 LSH