Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1487 ATGGTTCGCTCCAATGGCCTCAGACTCCTTCACTGTGTTGCTCGTCGATCTCTCTCTGCAAACAATTCCATATATGAAGGGATATTACGAAAGGGTTATAGGACATTGAATTCAGGACTTCGTAATCCATCCAGAGTTATTGGAAGTTGTTCATCAAATGTTGGAGATGGTGTTAATTTGAAGAATTGGTTACTATTGGGAGCAGCAAATACATGTTGGGGGGCATCTAGGTCTATTCATGGCTCTGCACCATTGGCAAAAGACTTTTATGATGTTCTTGGTGTGAGTAAGAATTCAAGTGCTTCTGAAATAAAGAAAGCATATTATGGGCTTGCAAAGAAGCTGCATCCAGACACAAACAAGGATGATCCTGAGGCTGAGAAGAAGTTTCAAGAAGTTTCATTGGCATATGAGGTTTTGAAGGATGAGGAAAAGCGTCAACAGTATGATCAGGTTGGCCATGATGCTTTTGTAAACCAACAAAGCACAGGTTTCGATGGAAACAGCGGCGGCGGCTTTAATCCATTTGAGCAGATATTCCGTGACCATGATTTTGCGAAGAGCTTTTTTCATCAGAATATCGGTGGAGAGGATGTCAAGGCATTCATTGAATTATCCTTTATGGAAGCTGTCCAAGGATGCACTAAAACTGTTACATTTCAAACAGATGTGCTTTGTAATACTTGTGGTGGGAGTGGTGTTCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTAAAGGCTCAGGAGTGACATATGTACAAGCTGGCCCATTTAGGATGGAACATACTTGTGGTGCATGTAAAGGAACTGGCAAAATTGTTTCGTCAATAGCGCGCTATAGCGCCGCAATAGCAGAGTGTTGCAGTGTTTCGACTGTTACCCACAACGCCATAGTGGATAGCATTGCAGATGGCCGTAGCGCCTGTAGCAGGCTGTTATTCAATAGCTTCTTGTTATCTTATTTTCTTCTTATACTTGTTTGTAATCCATCTTTAAAGAGTTTTTGCAAGTCATGCAGAGGTGCGAAGGTTACCAAAGGAACAAAGTCAGTCAAATTGGATATTATGGCTGGGATGGATAGCAACGAGATCTTAAAGGTTTACAGAAGTGGTGGTGCAGATCCTGATGGAGATCATCCAGGTGATCTTTATGTTACTATCAAGGTCAGGGAAGATCCTGTTTTCCGTAGAGAAGGATCTAATATTCATGTAGATGCTGTTTTGAGTATCACTCAGAACAAAGGAGCTTCAAAGGTGTGGGCTTGCCGGAAAGGGGATGGATTGGGCTTGGCCTGGAAGGAACTGGCTAGGTATGGAAGGGCAATTTTGGGTGGAACCGTTCAGGTCCCTACTCTTACTGGAGATGTTGTTCTTAAGGTTCGTCCCGGCACCCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAGGCATTAAGACAAAAAATTCTTACACCTTCGGTGATCAATATGTTCATTTTAATGTCAGCATCCCCACGAACCTGACAGAGAGACAACGCGAATTGATAGAAGAGTTTTCCAAGGAAGAGCAAGGGGAATGTGATAAACAGAGAGCTGCTTCAGCTTCAGGTTGA 1593 0.4313 MVRSNGLRLLHCVARRSLSANNSIYEGILRKGYRTLNSGLRNPSRVIGSCSSNVGDGVNLKNWLLLGAANTCWGASRSIHGSAPLAKDFYDVLGVSKNSSASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSLAYEVLKDEEKRQQYDQVGHDAFVNQQSTGFDGNSGGGFNPFEQIFRDHDFAKSFFHQNIGGEDVKAFIELSFMEAVQGCTKTVTFQTDVLCNTCGGSGVPPGTRPETCKRCKGSGVTYVQAGPFRMEHTCGACKGTGKIVSSIARYSAAIAECCSVSTVTHNAIVDSIADGRSACSRLLFNSFLLSYFLLILVCNPSLKSFCKSCRGAKVTKGTKSVKLDIMAGMDSNEILKVYRSGGADPDGDHPGDLYVTIKVREDPVFRREGSNIHVDAVLSITQNKGASKVWACRKGDGLGLAWKELARYGRAILGGTVQVPTLTGDVVLKVRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVSIPTNLTERQRELIEEFSKEEQGECDKQRAASASG 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1487 530 SUPERFAMILY Chaperone J-domain 87 190 IPR036869 -
Lal1g1487 530 ProSitePatterns Nt-dnaJ domain signature. 130 149 IPR018253 -
Lal1g1487 530 Pfam DnaJ domain 88 150 IPR001623 -
Lal1g1487 530 Gene3D - 327 390 - -
Lal1g1487 530 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 333 414 - -
Lal1g1487 530 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 440 530 - -
Lal1g1487 530 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 29 281 - -
Lal1g1487 530 SUPERFAMILY HSP40/DnaJ peptide-binding domain 337 403 IPR008971 GO:0006457|GO:0051082
Lal1g1487 530 PRINTS DnaJ domain signature 90 108 IPR001623 -
Lal1g1487 530 PRINTS DnaJ domain signature 108 123 IPR001623 -
Lal1g1487 530 PRINTS DnaJ domain signature 125 145 IPR001623 -
Lal1g1487 530 PRINTS DnaJ domain signature 145 164 IPR001623 -
Lal1g1487 530 Gene3D - 391 527 - -
Lal1g1487 530 Gene3D - 226 277 - -
Lal1g1487 530 Pfam DnaJ C terminal domain 203 498 IPR002939 -
Lal1g1487 530 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 333 414 - -
Lal1g1487 530 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 29 281 - -
Lal1g1487 530 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 440 530 - -
Lal1g1487 530 Hamap Chaperone protein DnaJ [dnaJ]. 85 526 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lal1g1487 530 Pfam DnaJ central domain 226 276 IPR001305 GO:0031072|GO:0051082
Lal1g1487 530 CDD DnaJ_C 345 501 - -
Lal1g1487 530 CDD DnaJ_zf 226 277 IPR001305 GO:0031072|GO:0051082
Lal1g1487 530 CDD DnaJ 88 142 IPR001623 -
Lal1g1487 530 Gene3D - 198 225 - -
Lal1g1487 530 Gene3D DnaJ domain 85 197 IPR036869 -
Lal1g1487 530 SUPERFAMILY HSP40/DnaJ peptide-binding domain 441 509 IPR008971 GO:0006457|GO:0051082
Lal1g1487 530 ProSiteProfiles dnaJ domain profile. 88 153 IPR001623 -
Lal1g1487 530 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 213 276 IPR036410 -
Lal1g1487 530 ProSiteProfiles Zinc finger CR-type profile. 213 297 IPR001305 GO:0031072|GO:0051082
Lal1g1487 530 SMART dnaj_3 87 145 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1487 Lal-Chr1 16856884 16867709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1487 90 150 C2H2 Transcription Factor Family AT1G74250 45.455 2.46e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1487 K03686 - gmx:100784630 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1487 1 16856884 16867709 Lal1g1487 1 16856884 16867709 ECH