Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1466 ATGTCGACGGCGGAGGCAGATTTAATAACATATTGGTGCCACGAATGCGATATGAGCGTAGCTCTCACTCCCTCTCAATCTCCTTCACCACTTCTTTGTCCCCATTGCCTAACACAATCCCTCGAGCTCATGGATTCTCCTTTCCATCAAAACGACGCCGCATCACCACTTTCAATCTTCGATTCCCCTTTCCTCCACAGCCTAATTTTCACCACTAACCTAAACGACGTCGTCGTTGAAGACCCTCTCTCTCTACTTTACCCAACAACGCTAACACCCTCAAAACCACGCGCATCAGAAACCGTACCTGTAATCGCTGTAACTTCATCGTTGCTCTTAAATCTTGACCCAAACGGCGTCGTTTTATGCGCTGTTTGCAAAGACGATATCGCCGTCAACGATAACGCGAAGATTCTTCCTTGCAACCACTTGTACCATTCCGATTGCATAACGCCGTGGCTTTTAAGCCATGACTCGTGCCCTCTGTGTCGGTTTCGGGTGGTGGAGGCGGAAGCGAAAAGAGAAGAAGGTGGCGGCGGTGACGGTGATGGTGAAAGGAATAGGGAGATAAGAAGGCAGTTGACGGTGGCGATGGCGAGGCTTTTGGAGCTGATGGAGGAAGAGGAAGAGGAGGATTTGTATGGATTGAGAACTACTTTGAATCACATTGCTTCTAGGAATGGGATTCTTCATGAGGATTCTGATGATTCTGGTGTGCGTGAGACTGTGATTGTTAGCGTTGGTGGTGGTGGTGGTGATGGTGGAGATGAACAATTACTCTGA 783 0.4866 MSTAEADLITYWCHECDMSVALTPSQSPSPLLCPHCLTQSLELMDSPFHQNDAASPLSIFDSPFLHSLIFTTNLNDVVVEDPLSLLYPTTLTPSKPRASETVPVIAVTSSLLLNLDPNGVVLCAVCKDDIAVNDNAKILPCNHLYHSDCITPWLLSHDSCPLCRFRVVEAEAKREEGGGGDGDGERNREIRRQLTVAMARLLELMEEEEEEDLYGLRTTLNHIASRNGILHEDSDDSGVRETVIVSVGGGGGDGGDEQLL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1466 260 ProSiteProfiles Zinc finger RING-type profile. 123 164 IPR001841 -
Lal1g1466 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 48 - -
Lal1g1466 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 181 - -
Lal1g1466 260 SMART ring_2 123 163 IPR001841 -
Lal1g1466 260 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 59 181 - -
Lal1g1466 260 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 48 - -
Lal1g1466 260 Pfam Ring finger domain 123 164 IPR001841 -
Lal1g1466 260 SUPERFAMILY RING/U-box 122 170 - -
Lal1g1466 260 Coils Coil 187 211 - -
Lal1g1466 260 Pfam zinc-ribbon 10 43 IPR039525 GO:0061630
Lal1g1466 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 180 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1466 Lal-Chr1 16644063 16644845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1466 4 167 C3H Transcription Factor Family AT3G60080 34.466 2.59e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1466 K11982 - gmx:100775530 194.512