Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1410 ATGGTATGCAGCAGTTGTGTGAGGTCTTTGGTTATTCAAGCTGGAACCTTTGCCAAAAGAGTGAAAATCAACAGCATTGGAGGGAGGAGTTTGCAACAAGTTTCCAGAATATCTTATTGGTCTAATCGTGAATTTAAGAAAATTATAGGGATGATGGTTGATACGGGTTCTATGTCGTCGAGGGATGGACCCCTTCTTGATAATACGATCACAGAGAAAGATGACGATGGTCAGTTTGCCAGTGGAGGATGGAAAAGTGAGGATGGAAGACTTGGCTGTGGGTATTCAAGTTTTAGGGGGAAGAGAGCGACAATGGAAGATTTTTATGATATTAAGACATCAAAGATCGGTGGTCGATCAATATGCTTATTTGGAATATTTGATGGTCATGGTGGTTCCCGTGCTGCTGAGTATTTGAAGGACCATCTCTTTGATAATCTCATGAAGCATCCAAAGTTTTTGGCAGATGCCAAATTGGCACTTAAGAATGCTTTTTTATTTCAACCGTCTGCTTTATTTTGTTTCAATTATAATAACTTCAGTAAGCTTCCAGGTGAAACATATCAACAGACAGATGCTGATTTTCTGAATGCTGAGAAGGATACATTCCGGGATGATGGGTCCACAGCTTCAACAGCAATTTTGGTTGATAACCATCTTTATGTAGCTAATGTTGGAGACTCTAGGACTATAATATCGAAAGCTGGTAAAGCAATTGCTCTCTCTGAGGATCACAAACCAAATAGAAGTGATGAACGGAAGAGAATTGAGAATGCTGGGGGTATTGTCATGTGGGCAGGTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGCGCCTTCGGCAATCGCATGTTGAAGCCATTTGTTGTAGCAGAACCTGAGATCCAGGATCAAGAGATAGATGAGCAAATTGACCTACTTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAAAATGACGATGCTGTTTCTCTTGCCCGCACTGAAGAGGAGCCCGAGGCAGCTGCTCGTAAGTTAACAGAAGCTGCATTTTCTCGTGGCAGTGCCGATAACATTACATGCATTGTGGTGCGCTTCCATCATAATAACGCAGACCTCACTAATCCTGACAAAGCAGACCTCACTAATCCTGACAAAGCAGAATCAGCTAGCGTCGAGCATGAGCCGGAAAAATAA 1182 0.4272 MVCSSCVRSLVIQAGTFAKRVKINSIGGRSLQQVSRISYWSNREFKKIIGMMVDTGSMSSRDGPLLDNTITEKDDDGQFASGGWKSEDGRLGCGYSSFRGKRATMEDFYDIKTSKIGGRSICLFGIFDGHGGSRAAEYLKDHLFDNLMKHPKFLADAKLALKNAFLFQPSALFCFNYNNFSKLPGETYQQTDADFLNAEKDTFRDDGSTASTAILVDNHLYVANVGDSRTIISKAGKAIALSEDHKPNRSDERKRIENAGGIVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQDQEIDEQIDLLILASDGLWDVVQNDDAVSLARTEEEPEAAARKLTEAAFSRGSADNITCIVVRFHHNNADLTNPDKADLTNPDKAESASVEHEPEK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1410 393 CDD PP2Cc 92 361 IPR001932 -
Lal1g1410 393 Gene3D - 85 367 IPR036457 -
Lal1g1410 393 SUPERFAMILY PP2C-like 89 362 IPR036457 -
Lal1g1410 393 SMART PP2C_4 82 359 IPR001932 -
Lal1g1410 393 PANTHER ALPHABET, ISOFORM E-RELATED 185 371 - -
Lal1g1410 393 PANTHER ALPHABET, ISOFORM E-RELATED 57 165 - -
Lal1g1410 393 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 185 371 - -
Lal1g1410 393 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 57 165 - -
Lal1g1410 393 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Lal1g1410 393 ProSiteProfiles PPM-type phosphatase domain profile. 92 361 IPR001932 -
Lal1g1410 393 SMART PP2C_SIG_2 74 361 IPR001932 -
Lal1g1410 393 MobiDBLite consensus disorder prediction 368 393 - -
Lal1g1410 393 Pfam Protein phosphatase 2C 93 354 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1410 Lal-Chr1 16187374 16194117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1410 1 392 PP2C-type Phosphatase Gene Family AT5G53140 60.298 1.07e-167 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1410 K17506 - gmx:100805795 570.852