Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1403 ATGGCAACTGAAGCTGAACCTACAAGTACCCCAATTCACAAGGATGTAGAGTCAACTGAAATAACTGAAGAACAACCTAGTAGACAACAACAACAACATGGGAGAAGGAAAAACCTTATCTTGGAGATACCCACAAAAAATTTGGATGAAGCAAAAGAGAATATTTTCAGGATAAACACTCCTCCAAAGGGAGAGATTTTCTCCCCTTTATCCACAAGCAATGACTTTCCAGGTCCTTCAATAAAAAATAAATCAACTGTTAAAACAGCCCTTATTCCAAAACTTGGTTTAAAATTTCACATGAGTTCAGATATTGAAAAGGCTTCATCACTAGCACTTGAAGAAGGTTCACCGCCACGAAAAAATCCTACAATTTCAAGGACATTATCTCTTACAAAGTTTATCAGCACCACTAGTGGGAATAAAATGTCTTCCTTACCAATAACTTCAATTGCTCAGTCAAATTCAAAATCTACACATGAAGGGAACATAGCCTATTCAGCAACATCTGTTAAAAAAGGACAGGAATTACCGATTCATCGCTCCCGTTCAGTTCCTGTGCTTACTAAACTTAGGAACACATCTGTAGGTAGCATGTTTCGTGTAGTTCCAACCACACCGCGGTTCACCGGGAGTATTGCCACAACATCTATGAAATCTCCACCTGATGATACTGTTGAAAATGAGGATGAGGAAGATATTCCCGAAGAAGAAGCTGTATGCAGAATTTGTTTGATTGAATTAGGAGAAGGTGGTGATATACTTAAAATGGAATGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAATGTGCAGTTAAATGGTTTAATATAGTCAAACACATACCTAAGGCAAGTAATCATCTATACGAATCAACATCAGCCAACATAAGAGACCATCATCAAGCACATTTTCATCAACGAAGCATAATAATCACAACCAGCAGGCAGTCCAGAATAAAGAAAATACGTATAAGGAAGGGGGGTTGGATCGATTACATGATTCCGTCGCTGCTACCGGAGTGGAAAAGGAACGGTTCCGCCGAGGAGCTATAA 1059 0.3947 MATEAEPTSTPIHKDVESTEITEEQPSRQQQQHGRRKNLILEIPTKNLDEAKENIFRINTPPKGEIFSPLSTSNDFPGPSIKNKSTVKTALIPKLGLKFHMSSDIEKASSLALEEGSPPRKNPTISRTLSLTKFISTTSGNKMSSLPITSIAQSNSKSTHEGNIAYSATSVKKGQELPIHRSRSVPVLTKLRNTSVGSMFRVVPTTPRFTGSIATTSMKSPPDDTVENEDEEDIPEEEAVCRICLIELGEGGDILKMECSCKGELALAHQECAVKWFNIVKHIPKASNHLYESTSANIRDHHQAHFHQRSIIITTSRQSRIKKIRIRKGGWIDYMIPSLLPEWKRNGSAEEL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1403 352 SMART ringv_2 240 283 IPR011016 GO:0008270
Lal1g1403 352 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 9 279 - -
Lal1g1403 352 MobiDBLite consensus disorder prediction 211 232 - -
Lal1g1403 352 ProSiteProfiles Zinc finger RING-CH-type profile. 233 296 IPR011016 GO:0008270
Lal1g1403 352 CDD RING_CH-C4HC3_MARCH 241 279 - -
Lal1g1403 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 290 IPR013083 -
Lal1g1403 352 SUPERFAMILY RING/U-box 237 279 - -
Lal1g1403 352 PANTHER OS02G0165000 PROTEIN 9 279 - -
Lal1g1403 352 MobiDBLite consensus disorder prediction 1 39 - -
Lal1g1403 352 Pfam RING-variant domain 241 279 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1403 Lal-Chr1 16026971 16028977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1403 226 279 C3H Transcription Factor Family AT2G37950 40.000 7.84e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1403 - - gmx:100789854 313.538