Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1397 ATGTTCTTGTTCCAAAACTTTTCAATGAAACCCATATTTTGGTTTCTTATAAAGCTCTTACCTTTGTTGTTTCTTTGTTCAAATGCAGAATCCAAATGCACACAAGGTTGCCCAATAGCTCTAGCTTCATACTATATGTTGTTAGGTTCAAATTTCACATATATTTCTCAGATAATGTCATCACAAGTTCTTCATACACCAGAAAACATAGTTAGTTACAACAAAAACATAGTACCAAACAAAGACAAAGTTGAAGCTTTCACTAGGGTCAATGTTCCATTCCCATGTGAATGCATCAAAGGTGAGTTTTTGGGTCATATGTTTGAGTATGTTGTTCAGACAGGGGATACTTATGAAACTGTTGCTGGAACAAAGTATGCAAATTTGACTAATGTTGATTGGTTGAGGAGGTTCAATACATATCCTCCTGATAATATTTCTAATACAGGAATGCTTAATGTTACTGTTAATTGTTCTTGTGGGAATAGTGATGTATCAGATTATGAGTTGTTCATTACATACCCACTTAGGCCTGGGGAAACTTTGGGTTCAGTGGCTAGTAGTGTGAAACTTGATACTGGGTTGCTGCAGAGGTACAATCCTAGTGTGAATTTCAACCAAGGGAGTGGTCTGGTCTATATTCCAGGAAAAGGTTTTGGTGGTAGGGCTATTGCTGGGATTGTTGCTGGAGTAGTGGTTGGTCTTCAGTTGTTGATAGTTTGTATATATGTTCTATGTTTCCGGAAGAAGAAGAAGATACAGAAAGAGGAAGTTGTTGGACAAGATTCCAAATCACTCTCAGTTCCATATGGGATGGACGAAACCACTCCTATTGCTGCATATGAAACTTCAAGACCTGGTGGTCCTGCTGCGATCTCAGGCATTTCAATGGACAAATCGGTGGATTTCTCTTATAAAGAACTTGCAAATGCGACAAATGACTTCAGTATGGCTAATAAAATTGGTGAAGGTGGTTTTGGCATTGTCTACTATGCAAATCTAAGAGGAGAAAAAGCTGCAATCAAGAAGATGGATATGAAAGCATCAAAAGAATTTCTTGCTGAATTGAAAGTCCTGACACATGTTCATCATCTTAACCTGGTGCGGTTGATTGGATACAGTATAGAGGGATCTCTTTGCCTTGTCTATGAATTCATTGAGAATGGAAACTTGAGCCAACATCTGCATGGTTCAGGAAGAGAACCACTGCCATGGCCTATCAGAGTGCAGATTGCTTTGGATTCTGCCAGAGGTCTTGAATATATTCATGAGCATACAATGCCTATATATATTCATCGTGACATAAAGTCGGCGAATATACTAGTAGACAAAAATTTCCGGGGGAAGGTTGAGTATGTTCCGAGATCTTTATTTTTGAAGATTTTGAGTGTGTTATGGAAGGTTGCTGATTTTGGTTTGGCAAAACTGGCCGAAATTGGAAGTTCATCGCGTCCTACTGCTCGTCTTGTTGGAACGTTTGGATACATGGCTCCGGAGTATGCACAATATGGAGATGTTTCCCCCAAAGTAGATGTATATGCTTTTGGAGTTGTTCTTTATGAACTTATTTCTGCTAAGGAAGCTATCATCCAATCTATTGTTGACTCAAAGAGCCTTGTAGCTTTGGTTAATCTTGATTTCTCTACTGAACAATTTTATTATTCAAATCAACCTTCGGCATCGTTCCTCGTCGTTCTAAATTTCGAAGGAGTTCTTTGTCAGCCTGATCAAACTGAAGATCTTTGCAAGCTTGTGGATCCAAGGCTAGGGGACAACTACCCTATTGATTCTGTTATGAAGCTTGCTCAACTAGCCAAAGCATGTACACAAGACAATCCCCAACTGCGTCCAAGTATGAGATCAATTGTGGTGGCTCTTATGACATTGTCTTCAACTACTGAAGATTGGGATATTGGTTACTTCTATGAAAATCAAAATCTTATGAATCTTATGTCAGGAAAATAG 1965 0.3873 MFLFQNFSMKPIFWFLIKLLPLLFLCSNAESKCTQGCPIALASYYMLLGSNFTYISQIMSSQVLHTPENIVSYNKNIVPNKDKVEAFTRVNVPFPCECIKGEFLGHMFEYVVQTGDTYETVAGTKYANLTNVDWLRRFNTYPPDNISNTGMLNVTVNCSCGNSDVSDYELFITYPLRPGETLGSVASSVKLDTGLLQRYNPSVNFNQGSGLVYIPGKGFGGRAIAGIVAGVVVGLQLLIVCIYVLCFRKKKKIQKEEVVGQDSKSLSVPYGMDETTPIAAYETSRPGGPAAISGISMDKSVDFSYKELANATNDFSMANKIGEGGFGIVYYANLRGEKAAIKKMDMKASKEFLAELKVLTHVHHLNLVRLIGYSIEGSLCLVYEFIENGNLSQHLHGSGREPLPWPIRVQIALDSARGLEYIHEHTMPIYIHRDIKSANILVDKNFRGKVEYVPRSLFLKILSVLWKVADFGLAKLAEIGSSSRPTARLVGTFGYMAPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIIQSIVDSKSLVALVNLDFSTEQFYYSNQPSASFLVVLNFEGVLCQPDQTEDLCKLVDPRLGDNYPIDSVMKLAQLAKACTQDNPQLRPSMRSIVVALMTLSSTTEDWDIGYFYENQNLMNLMSGK 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1397 654 Pfam Protein tyrosine and serine/threonine kinase 317 536 IPR001245 GO:0004672|GO:0006468
Lal1g1397 654 Gene3D Phosphorylase Kinase; domain 1 294 385 - -
Lal1g1397 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Lal1g1397 654 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1 18 450 - -
Lal1g1397 654 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1 467 654 - -
Lal1g1397 654 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 18 450 IPR044812 GO:0019199|GO:0045087
Lal1g1397 654 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 467 654 IPR044812 GO:0019199|GO:0045087
Lal1g1397 654 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Lal1g1397 654 ProSiteProfiles Protein kinase domain profile. 315 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1397 654 Gene3D Transferase(Phosphotransferase) domain 1 386 644 - -
Lal1g1397 654 SUPERFAMILY Protein kinase-like (PK-like) 303 635 IPR011009 -
Lal1g1397 654 SMART serkin_6 315 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1397 Lal-Chr1 15968322 15978468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1397 19 654 Receptor kinase-like Gene Family AT3G21630 52.030 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lal1g1397 PK_Tyr_Ser-Thr 5.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1397 - K13429 gmx:100777781 838.565