Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1384 ATGAACAATTGGTTGGGATTTTCTCTCACTCCTCATTTGAGGATTAGTGAAGATTTTGGTAGAGAAAGACAAGATCATGAAGGAGGAAGAGGATCCTATCCTCATCATTTGTCTGTTATGCCTTTGCATTCTGATGGTTCTCTTTGTGTTGCTGATTCTTTCAGACACTCAGCTCCACATGAAGAATGGAGATATGATAATGAAGGGAATTCAAGTGAAGAAGGTCCAAAACTTGAAGATTTCTTAGGATGCTATTCAAACTCATCAATTTCTGAAACCAAAGTCTTTTGCCAACAAGATATTACAACACATCATAATCAAAACCAAAGTAACAACAACATTTCCAAGATTAATGTCAATCTTTCTGAGGAAAATAATGTAACAAACCAATCTTCTATGATCCAATCTTTCCATGCATATAATGAAAACCCACATGACATAATCCATAGCGATGCAATGTATAAATCTTGGTTAGCACAAACTCAGTTTTCTGATGCAACAAAACCTTCTTTAGTAGAAAATGGGGGTAACTTTCAATCATTGAATTTGACTATGAGTCCTATTGAACAAAATATAGTTGGAAAAGTTTCACCTTTGCAAGTTGATGATGATAGTAGAAAACGTTCCAGAGTGAAAATTCAAGGTAGGGAACATCTTCCTCGCAAATCTATTGACACTTTTGGGCAAAGAACTTCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGAAGATATGAGGCCCATTTGTGGGACAATAGCTGCAGGAAGGAAGGACAAACAAGGAAAGGAAGACAAGGTGGTTATGACAAGGAAGAAAAAGCAGCTAGGGCTTATGACTTAGCTGCAATCAAGTATTGGGGTGCAACAACTCACATAAATTTCCCTTTAAGCACTTACGAGAAGGAACTTGAAGAGATGAAGAATATGACCAGACAAGAATTTGTTGCCAATTTAAGAAGGAAAAGTAGTGGATTTTCAAGAGGGGCTTCTGTCTATAGAGGAGTGACAAGACACCATCACCATGGAAGGTGGCAGGCTCGGATCGGAAGGGTTGCCGGAAATAAAGACTTGTATCTTGGTACATTCAGTACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATTAGTAGGTATGATGTGAAAAGAATTTGCTCAAGCTCAACGCTCATTGCAGGCGACCTTGCAAAACGGTCGCCGAAAGATGCAGCTCCTGTTGCTGCTGCTGCTGCTGCTGAGGACTTCAATCGGTGTGGTTCATCCACACCTTCTCAGCCGATGCCTTTGGCTATAACCAATGGGGAACACAGCGATGAATTTTCGAACATGGTGTGGAATGGCAACAGTGATGAGCAAGCTGAGAGCGAAAACACGAACAATGTCTCCGAATCATCGAAACAGGTTTCGCCAAGAAACAAGAATGTGTTGAACCCTCAAAGCCCGAAGTCTTTGGTGGGACTACCCAATGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGGTACTTCACCCTATCGGGACCAAAATACGACGACGATGATGGAAATGATGACAATAACCGCACGGACGATAACCGTCTTGGAAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCCTTGTGGAATGATTGA 1680 0.4095 MNNWLGFSLTPHLRISEDFGRERQDHEGGRGSYPHHLSVMPLHSDGSLCVADSFRHSAPHEEWRYDNEGNSSEEGPKLEDFLGCYSNSSISETKVFCQQDITTHHNQNQSNNNISKINVNLSEENNVTNQSSMIQSFHAYNENPHDIIHSDAMYKSWLAQTQFSDATKPSLVENGGNFQSLNLTMSPIEQNIVGKVSPLQVDDDSRKRSRVKIQGREHLPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAAIKYWGATTHINFPLSTYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHHHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDAAPVAAAAAAEDFNRCGSSTPSQPMPLAITNGEHSDEFSNMVWNGNSDEQAESENTNNVSESSKQVSPRNKNVLNPQSPKSLVGLPNEFGVSGADYGHGYFTLSGPKYDDDDGNDDNNRTDDNRLGNLGLVNQVPMFALWND 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1384 559 Gene3D AP2/ERF domain 232 298 IPR036955 GO:0003700|GO:0006355
Lal1g1384 559 Gene3D AP2/ERF domain 332 392 IPR036955 GO:0003700|GO:0006355
Lal1g1384 559 CDD AP2 232 298 IPR001471 GO:0003700|GO:0006355
Lal1g1384 559 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 484 - -
Lal1g1384 559 PRINTS Ethylene responsive element binding protein signature 234 245 IPR001471 GO:0003700|GO:0006355
Lal1g1384 559 PRINTS Ethylene responsive element binding protein signature 372 392 IPR001471 GO:0003700|GO:0006355
Lal1g1384 559 MobiDBLite consensus disorder prediction 522 541 - -
Lal1g1384 559 SUPERFAMILY DNA-binding domain 232 298 IPR016177 GO:0003677
Lal1g1384 559 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 40 484 - -
Lal1g1384 559 MobiDBLite consensus disorder prediction 525 539 - -
Lal1g1384 559 ProSiteProfiles AP2/ERF domain profile. 233 296 IPR001471 GO:0003700|GO:0006355
Lal1g1384 559 ProSiteProfiles AP2/ERF domain profile. 332 390 IPR001471 GO:0003700|GO:0006355
Lal1g1384 559 MobiDBLite consensus disorder prediction 454 503 - -
Lal1g1384 559 CDD AP2 331 392 IPR001471 GO:0003700|GO:0006355
Lal1g1384 559 MobiDBLite consensus disorder prediction 454 499 - -
Lal1g1384 559 SUPERFAMILY DNA-binding domain 331 392 IPR016177 GO:0003677
Lal1g1384 559 Pfam AP2 domain 233 288 IPR001471 GO:0003700|GO:0006355
Lal1g1384 559 Pfam AP2 domain 331 382 IPR001471 GO:0003700|GO:0006355
Lal1g1384 559 SMART rav1_2 233 302 IPR001471 GO:0003700|GO:0006355
Lal1g1384 559 SMART rav1_2 332 396 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1384 Lal-Chr1 15882416 15887246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1384 1 415 AP2-EREBP Transcription Factor Family AT1G72570 51.868 6.60e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal1g1384 AP2 5.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1384 K09285 - gmx:100805489 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1384 1 15882416 15887246 Lal1g1384 1 15882416 15887246 ECH
Lal20g1029 20 13670168 13674989 Lal1g1384 1 15882416 15887246 LSH
Lal1g1384 1 15882416 15887246 Lal18g0120 18 958901 962581 LSH