Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1358 ATGGAACTCCCCAGTGGTTTTGCAGTCTGGTCCAACAACAAGTGGTATCAGAGCCGATGGTTCGGCGGTGACATGGTGGACTTAAGGGGAGGTACCGGAAAGTATGTGGTACCCACACTTGAGGGGATATTGATAGACGTTAGACGTGATGCTTCACTTGTGGCTCTCCACTCTTCCCATACCCCGTGTATACGCACAAATGGAAAACCTGCCTATGTGATCATCAAGATAGACAACAAGAAGGTTGCGAAAACGAGCGAAGACGAAGATCGAATTTGGAACCAAACATTCCAGATTCAATGTGCTCATCCAGCTGATGCAACAATCACCATTGTACTAAAAACATCACTCTCCACACTAGGGAAATTCCATATCCAAGCCATGCAACTATTGGAGCAAAGAAGTATGATAAATGGGTTCTTTCCTCTCCTAATGGAAAATGGAAAACCAAACCCAAAACTCAAATTAAGGTTTGCATTATGGTTCAAGCCAGCAGAACTAGAACCAAGTTGGGAAAAAGTACTAAGAAATGAGGAGTTTCAAGGGCTTAAGGATGTTACATTTCCACAAAGGTCCAATTGTGAGGTCAAACTTTATCATGATGCTCATCATTCTTCTGCATTTCAACCTCCCTTTGATCTATGTGGAGCTCCAAGAAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAGTATATAGTTTACATAGCAGGCTCGTCCTTCAATCCCAACATGGTTCTGGTTAGAGACCCTCAAACAGAAATCCAACATGCAAGAGGAATAAGTTTGGGAGAGCTATTGAAGAAAAAAGCAGATGAAGGAGTTTCTGTGAGAGTTATGCTTTGGGATGATGAAACATCTTTACCCTTTATTAAGAACAAAGATGTAATGAACACCAATGATGAAGATTCTTTTACTTATTTCAACAACACAAAAGTAATATGCATAAAGTGTTCAAGGTTACACCATAAATTTCCCACACTCTTTTCTCATCATCAAAAGACTATTACTATGGACACAAAAGCATCAAAATATGTTAATGTTAGAGAACTTATGAGTTTTGTGGGTGGTTTAGATTTGTGTGATGGAAGATATGACACAGAGAAACATTCATTGTTTCAAACACTCATTAGGGAATCTCATTGCTATGACTTCTATCAGACAAATATTGCAGGATCTAGCCTCAACAAAGGAGGGCCAAGATTGCCTTGGCATGATGCTCATGCTTGTGTTATCGGCGACGCCGCTTGGGATGTGTTAACAAATTTTGAGCAAAGATGGTCAAAGCAATGTGATCCTTCACTTCTAGTCTCTGCTAGCACCTTATTAAGCCTTATGCCAAGGACAGGCTCAAGCAATTCAATAGAGAGGGATTGGAATGTTCAAGTATTCAGGTCAATTGACCATTCCTCGGGTAATAACTTGTTCAGCAAGTTAACTGTAGAGAGGAGCATACATGAAGCTTATGTTGACGCAATTAGGCGTGCCGAAAGTTTTATCTACATCGAAACCGAATATTTCATTGGAGGGTGTCATATGTGGGAGAAAGATAGGAATTGCGGCTGCACGAATCTAATTCCGATAGAAATTGCACTCAAAGTGGTAAATAAGATAAAGGCAAAAGAGAGGTTTGCAGTGTATATAGTCATATCGATGTGGCCAGAAGGAGTTCCTGAAAGTGAACCTGTTCAAGATATATTGCATTGGACAAGGCAAACAATGTCAATGATGTATAGGTTGATAGGAGAAGCAATACACGAAAGCGGTGAACTACAACATCCTAGAGACTACTTGAGTTTCTTCTGCCTCGCAAATCGGGAGCATAAGGGAAAAGGAGAGTATCTTCCACCAGATTCACCTCTTCATGGAACACAATATTGGAATGCACAAAAATATAGAAGATTCCTTGTTTATGTCCACTCCAAACTCATGATAGGATCAGCAAATGTGAACCAAAGATCAATGGATGGAAAAAGGGACACAGAAATTGCCATAGGATGCTACCAATCTCATGATGAAGTTTATAACCAAATGAGCCATAGTGATATTAAAGCATATAGAATGTCACTATGGTATGAACACACAAGTATTGTTGATGCATTATTCTTAGAGCCAAAAAATTTGGAATGTGTTCATAGAATGTGTTCAATTGGAGATAAAATGTGGCAAATATATGCTAATGAAGAAATTGTTGACATGGGAAATGTGCACCTTGTAACTTACCCTATGAGGGTGACACATGAAGGGTATGTGAAGGACCTAAGTAATGGAATTTATTTTCCTGATACAATGTCTCTAGTGAAGGGTAAGAGGTCAAAAATGTTGCCCCCTATGCTTACAACTTAG 2352 0.3971 MELPSGFAVWSNNKWYQSRWFGGDMVDLRGGTGKYVVPTLEGILIDVRRDASLVALHSSHTPCIRTNGKPAYVIIKIDNKKVAKTSEDEDRIWNQTFQIQCAHPADATITIVLKTSLSTLGKFHIQAMQLLEQRSMINGFFPLLMENGKPNPKLKLRFALWFKPAELEPSWEKVLRNEEFQGLKDVTFPQRSNCEVKLYHDAHHSSAFQPPFDLCGAPRKLWEDVYKAIEGAKYIVYIAGSSFNPNMVLVRDPQTEIQHARGISLGELLKKKADEGVSVRVMLWDDETSLPFIKNKDVMNTNDEDSFTYFNNTKVICIKCSRLHHKFPTLFSHHQKTITMDTKASKYVNVRELMSFVGGLDLCDGRYDTEKHSLFQTLIRESHCYDFYQTNIAGSSLNKGGPRLPWHDAHACVIGDAAWDVLTNFEQRWSKQCDPSLLVSASTLLSLMPRTGSSNSIERDWNVQVFRSIDHSSGNNLFSKLTVERSIHEAYVDAIRRAESFIYIETEYFIGGCHMWEKDRNCGCTNLIPIEIALKVVNKIKAKERFAVYIVISMWPEGVPESEPVQDILHWTRQTMSMMYRLIGEAIHESGELQHPRDYLSFFCLANREHKGKGEYLPPDSPLHGTQYWNAQKYRRFLVYVHSKLMIGSANVNQRSMDGKRDTEIAIGCYQSHDEVYNQMSHSDIKAYRMSLWYEHTSIVDALFLEPKNLECVHRMCSIGDKMWQIYANEEIVDMGNVHLVTYPMRVTHEGYVKDLSNGIYFPDTMSLVKGKRSKMLPPMLTT 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1358 783 Gene3D Endonuclease Chain A 455 693 - -
Lal1g1358 783 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 70 159 IPR035892 -
Lal1g1358 783 PANTHER PHOSPHOLIPASE D ALPHA 62 783 - -
Lal1g1358 783 SUPERFAMILY Phospholipase D/nuclease 176 439 - -
Lal1g1358 783 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 329 366 IPR001736 GO:0003824
Lal1g1358 783 Pfam Phospholipase D C terminal 702 772 IPR024632 -
Lal1g1358 783 Pfam C2 domain 71 143 IPR000008 -
Lal1g1358 783 PANTHER PHOSPHOLIPASE D 62 783 IPR015679 -
Lal1g1358 783 Gene3D Endonuclease Chain A 209 454 - -
Lal1g1358 783 SUPERFAMILY Phospholipase D/nuclease 451 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1358 Lal-Chr1 15407774 15411577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1358 63 783 Phospholipase D Gene Family (Wang group) AT1G55180 60.000 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1358 K01115 - gmx:100812642 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1358 1 15407774 15411577 Lal1g1358 1 15407774 15411577 ECH
Lal10g1101 10 17875379 17878421 Lal1g1358 1 15407774 15411577 PCT
Lal1g1358 1 15407774 15411577 Lal10g1101 10 17875379 17878421 PCT