Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1337 ATGGGAAAAACTACAAGGTGGTTGAAGGGTTTATTGTGGATGAAGAAGGAGAAGGATCTTAATGATTCAAATTTAGGGTCATTGGTTCCTATCAAGAAGGAGAAAAAATGGTGGAGTTTTGCAAAGCAAGGGAAGGATATGGTTGAAGCTAGTTCTAATGGTGATGTTGCAGTTTCATCTTGTGATAATAGTGATTGGCTTAGATCCTATATTGCTGAATCTAATGAGCAGAATAAGCATGCAATTGCTGTTGCAGCTGCCACAGCCGCCGCGGCGGACGCAGCTGTGGCTGCGGCGCAGGCGGCTGTGGCAGTTGTGAGGCTGACAAGCCATGGGAGAGGCACATTGTTCAGTGGTAGCAGAGAGAAGTGGGCTGCTGTAAAGATCCAAACTTTTTTCAGAGGATATTTGCAAATGGCACGAAAAGCTCTTCGAGCACTCAAAGGATTGGTTAAGATTCAGGCTCTTGTTAAAGGGTATCTAGTTCGAAAGAGGGCAGCTGCAACTCTTCATAGTATGCAAGCTCTAATCAGAGCTCAATCTACGGTTCGATCACAGCGAGCTCGTCGTTCCGTGAGCAAAGAGAGTACATTTTTACCCGAAGTTCATGCAAGAAAATCTTTGGAACGATTCGATGAAACAAAAAGTGAATTCCACAGTAAAAGACTACCGACATCTCATGAAACATCAACGAATGGATTTGATGAAAGCCCGAAAATTGTTGAAATTGATACTTACAAGACTAGATCCCGATCTAGGCGCTTTACCTCTACAATGTCGGAATGTGGAGAAGATATACCTTGTCATGCAGTACCATATTCACTTCCTAGTCCACTCCCCAGAAGAATCTCAGTCCCTGAGTGTAGACATGTTCAAGACTTCGAATGCTACTTAAATATCGACGAGTGTAGGTCAACCACAGCTCATAACACACCTCGTTTTGCAAGTTCGATGAGGCCGAGTTCCCCTGCTACACCGGCCAAGAGTGTTTGTGGAGACGCTTACTTTCAAACTTACTGCGATTCCCCTAGCTACATGGCCAATACTCAGTCATTTAATGCGAAACTAAGATCTCGCAGTGCTCCGAGGCAAAGACCTGAACCGAAGAAAAGGCTTTCACTCAACGAAATGTTGTCGGCGAGAAACAGCATAAGTAGTGTTAAAATGCAGAAACCATATGATTTCCAGCCTCAAGAATCATGA 1203 0.4414 MGKTTRWLKGLLWMKKEKDLNDSNLGSLVPIKKEKKWWSFAKQGKDMVEASSNGDVAVSSCDNSDWLRSYIAESNEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTLFSGSREKWAAVKIQTFFRGYLQMARKALRALKGLVKIQALVKGYLVRKRAAATLHSMQALIRAQSTVRSQRARRSVSKESTFLPEVHARKSLERFDETKSEFHSKRLPTSHETSTNGFDESPKIVEIDTYKTRSRSRRFTSTMSECGEDIPCHAVPYSLPSPLPRRISVPECRHVQDFECYLNIDECRSTTAHNTPRFASSMRPSSPATPAKSVCGDAYFQTYCDSPSYMANTQSFNAKLRSRSAPRQRPEPKKRLSLNEMLSARNSISSVKMQKPYDFQPQES 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1337 400 SMART iq_5 121 141 IPR000048 GO:0005515
Lal1g1337 400 SMART iq_5 145 167 IPR000048 GO:0005515
Lal1g1337 400 MobiDBLite consensus disorder prediction 360 374 - -
Lal1g1337 400 MobiDBLite consensus disorder prediction 354 400 - -
Lal1g1337 400 ProSiteProfiles IQ motif profile. 122 148 IPR000048 GO:0005515
Lal1g1337 400 ProSiteProfiles IQ motif profile. 148 175 IPR000048 GO:0005515
Lal1g1337 400 Pfam IQ calmodulin-binding motif 124 139 IPR000048 GO:0005515
Lal1g1337 400 Pfam IQ calmodulin-binding motif 151 165 IPR000048 GO:0005515
Lal1g1337 400 MobiDBLite consensus disorder prediction 376 400 - -
Lal1g1337 400 Pfam Protein of unknown function (DUF4005) 311 386 IPR025064 -
Lal1g1337 400 PANTHER PROTEIN IQ-DOMAIN 14-LIKE 1 394 - -
Lal1g1337 400 PANTHER IQ-DOMAIN 5-RELATED 1 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1337 Lal-Chr1 15133165 15136619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1337 1 389 IQD Protein Family AT3G16490 53.598 3.63e-100 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1337 - - gmx:100797686 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1337 1 15133165 15136619 Lal1g1337 1 15133165 15136619 ECH
Lal1g1337 1 15133165 15136619 Lal18g0163 18 1318471 1321729 LSH
Lal8g0269 8 1808852 1815200 Lal1g1337 1 15133165 15136619 PCT
Lal1g1337 1 15133165 15136619 Lal8g0269 8 1808852 1815200 PCT