Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1328 ATGGAATACTTTGTCGGTGGCTATTTCGGCGCCGGAGGTAACCAATTCTCGCCGGAAAAACTACACGGCGAACCAAAACCCGGTGAGCCTTTCGCCGTTGACGACCTCCTCGACTTCTCCAACGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGCGACTGGGAACTCTGACGACTCCTCCACCGTCGCCGTTCCTGTTGACAGCGGGAATTCTACAATTTCCGGCACCGTTGTTCCTTGCGCCGGCGGCGATTCTCAATTCTCCCGCGGAGAACTCTGTGTTCCGTATGATGATATAGCTGAACTAGAATGGTTGTCGAATTTTGTGGAAGACTCATTTTCCGTTGAGGAAGAGATAAAAACACTCAAACTTCTCTCCGGTGACGTCACCGTTTCCTCCACCATCGCCACCAAACCATACACCCCAGAGTCATCCTCATCCTCCGAAAACGACACAACAACCCAACCCCTTGGTAAAGTAAGAAGCAAGCGTTCACGCATTGCTCCATGCGACTGGTCCACGCGCCTCGGTCATCGTGTGACACCACCAAAAACAAAGAAGGAAGGGTTATTGAACATGAATTCAAGTAACAATAATAATGTAGAATGTTATCTAAGAAAGTGTTTGCATTGTGGTGCAGAGAAAACACCACAATGGAGAAGTGGGCCGATGGGCCCAAAAACATTGTGCAATGCGTGTGGTGTAAGGTTTAAGTCTGGTAGGTTGGTGCCAGAATATAGACCTGCAACGAGTCCAACGTTTGTGTCTACTAAGCATTCGAATTCTCATCGGAAGGTTATGGAGTTGAGGAGACAGAAGGAGGTTCATCTGCACCAACATCAACAATTGATTAGGCAAACTTCAATTTTCAGCGTATCCAACAGTGGAGATGATTACTTGATCCATCATCATCACCATTATTAG 930 0.4774 MEYFVGGYFGAGGNQFSPEKLHGEPKPGEPFAVDDLLDFSNADAIMSDGFFDNATGNSDDSSTVAVPVDSGNSTISGTVVPCAGGDSQFSRGELCVPYDDIAELEWLSNFVEDSFSVEEEIKTLKLLSGDVTVSSTIATKPYTPESSSSSENDTTTQPLGKVRSKRSRIAPCDWSTRLGHRVTPPKTKKEGLLNMNSSNNNNVECYLRKCLHCGAEKTPQWRSGPMGPKTLCNACGVRFKSGRLVPEYRPATSPTFVSTKHSNSHRKVMELRRQKEVHLHQHQQLIRQTSIFSVSNSGDDYLIHHHHHY 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1328 309 MobiDBLite consensus disorder prediction 139 164 - -
Lal1g1328 309 MobiDBLite consensus disorder prediction 139 162 - -
Lal1g1328 309 Pfam GATA zinc finger 210 243 IPR000679 GO:0006355|GO:0043565
Lal1g1328 309 CDD ZnF_GATA 209 256 IPR000679 GO:0006355|GO:0043565
Lal1g1328 309 SMART GATA_3 204 258 IPR000679 GO:0006355|GO:0043565
Lal1g1328 309 MobiDBLite consensus disorder prediction 176 195 - -
Lal1g1328 309 PANTHER GATA TRANSCRIPTION FACTOR 2 307 - -
Lal1g1328 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 208 268 - -
Lal1g1328 309 PIRSF Txn_fac_GATA_plant 19 298 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lal1g1328 309 ProSiteProfiles GATA-type zinc finger domain profile. 208 240 IPR000679 GO:0006355|GO:0043565
Lal1g1328 309 Gene3D - 207 284 IPR013088 GO:0006355|GO:0008270
Lal1g1328 309 PANTHER GATA TRANSCRIPTION FACTOR 9 2 307 - -
Lal1g1328 309 ProSitePatterns GATA-type zinc finger domain. 210 235 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1328 Lal-Chr1 15017883 15020558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1328 31 309 C2C2-Gata Transcription Factor Family AT4G32890 44.816 2.09e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal1g1328 GATA 1.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1328 - - gmx:100801234 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1328 1 15017883 15020558 Lal1g1328 1 15017883 15020558 ECH
Lal20g1154 20 16012680 16014872 Lal1g1328 1 15017883 15020558 LSH
Lal1g1328 1 15017883 15020558 Lal18g0167 18 1360310 1362620 LSH