Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1259 ATGGGTGAATTGAAGGACACTGAAGCTTACGAGGAAGAGCTCATCGATTACGAAGAGGAGGATGAAAAAACCCTTGATTCTTCTAAACTCACTGCTGAATCTGGCAAAAAGGGTTATGTTGGGATCCATAGTTCGGGATTTAGAGACTTCCTGTTGAAACCTGAGCTTCTTCGAGCCATTGTGGATTCTGGATTCGAGCATCCATCTGAAGGCAAGTTTTCATCTATGCTATCATTTATACTACATTACTTGCCTATTGGATCCAGATCTGGTGGCTTCGTCATTGTTGACTTTGTGCAACACGAATGTATCCCTCAAGCAATTCTAGGAATGGATGTCATCTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTCTCAACACTTCAGCAAATTGATCCTATTCCTGGTCAAGTTGCTGCTCTTGTTCTGTGCCACACAAGAGAACTAGCATATCAGATTTGCCACGAATTTGAGAGATTCAGCACATATGTTCCTGATATAAAAGTTGCTGTTTTTTATGGTGGTGTCAACATCAAGGTTCACAAAGAGTTACTCAATAATGAATGTCCTCATATTGTTGTTGGAACTCCTGGGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTCGAATCACTTGACATGAGAAGAGATGTGCAAGAGATTTTTAAATTAACTCCTCATGATAAGCAAGTTATGATGTTTTCAGCTACACTCAGCAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCGATGGAAATTTATGTAGATGATGAGGCCAAATTGACTCTCCATGGTCTCGTGCAGCACTACATTAAATTACAAGAGTCAGAGAAGAATCGTAAGTTAAATGATCTTCTTGATGCTCTGGACTTTAACCAAGTAGTTATCTTTGTCAAAAGTGTCAGCAGAGCAGCTGAGTTGAATAAGTTGCTCGTGGAGTGCAACTTCCCATCAATCTGCATACATTCTGGAATGTCACAGGAAGAAAGATTGAAACGGTACAAGGGCTTCAAAGAAGGGAAGCAAAGAATTCTTGTAGCAACAGATTTAGTAGGAAGGGGGATTGACATAGAACGTGTTAATATAGTAATCAACTATGACATGCCTGATTCTGCTGATACCTACCTTCACAGGGTGGGAAGAGCTGGTAGATTCGGCACCAAGGGGCTTGCAATTACTTTTGTTTCTTCTGCCTCTGACTCTGAAGTTCTCAATCAGGTGCAATCAAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAGCAAATTGACACTTCCACATATATGCCAAACTGA 1365 0.4088 MGELKDTEAYEEELIDYEEEDEKTLDSSKLTAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFSSMLSFILHYLPIGSRSGGFVIVDFVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPIPGQVAALVLCHTRELAYQICHEFERFSTYVPDIKVAVFYGGVNIKVHKELLNNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQSRFEVDIKELPEQIDTSTYMPN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1259 454 CDD SF2_C_DEAD 290 419 - -
Lal1g1259 454 Pfam DEAD/DEAH box helicase 99 263 IPR011545 GO:0003676|GO:0005524
Lal1g1259 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 428 IPR027417 -
Lal1g1259 454 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 305 450 IPR001650 -
Lal1g1259 454 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 277 IPR014001 -
Lal1g1259 454 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 26 76 - -
Lal1g1259 454 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 92 449 - -
Lal1g1259 454 SMART ultradead3 92 293 IPR014001 -
Lal1g1259 454 CDD DEADc_DDX39 44 279 - -
Lal1g1259 454 Pfam Helicase conserved C-terminal domain 303 410 IPR001650 -
Lal1g1259 454 Gene3D - 41 285 IPR027417 -
Lal1g1259 454 SMART helicmild6 329 410 IPR001650 -
Lal1g1259 454 Gene3D - 286 454 IPR027417 -
Lal1g1259 454 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 92 449 - -
Lal1g1259 454 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1259 Lal-Chr1 13849054 13854465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1259 1 454 Eukaryotic Initiation Factors Gene Family AT5G11200 78.427 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1259 K12812 - gmx:100799082 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1259 1 13849054 13854465 Lal1g1259 1 13849054 13854465 ECH
Lal20g1208 20 16564462 16571159 Lal1g1259 1 13849054 13854465 LSH
Lal1g1259 1 13849054 13854465 Lal18g0054 18 436332 438318 LSH