Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1258 ATGGCACAAATTTTGCTTCATGGAAATCTCCATGCTACTATCTTTGAGGTGGATAAACTCAAGGATGGTGGTGGCGGCGGCGGCGGCGGCAATTTTTTGAGCAAGATCATTGAAAACATCGGGGACAAAGTTGGTATCGGAAAAGGAGATACTAAACTTTATGCAACTATTGATCTGGAGAAGGCAAGAGTTGGAAGGACTAGAATTATTGAAAATGAAGAAAATAATCCTAAATGGTATGAGTCTTTTCACATTTATTGTGGCCACTTGGCTTCAAACATTATATTCACTGTGAAAAATGATAATCCTATTGGGGCAACTTTAATCGGAAGAGGATATGTTCCTGTCGAGGATGTATTGGATGGTGAGGAAATAGATCGATGGGTCGAACTCTTGGACAAGGATAAAAATCCAATACAGGAGGGTTCGAAGATCCATGTGAAGCTGCAATATTTCGATATCGCAAAAGATCGCAACTGGGATCGAGGCATTAGAAGTGCTAAATTTCCCGGAGTTCCCTATACTTTCTTCACGCAAAGACAAGGATGCAAGGTTACTCTTTACCAAGATGCTCATGTGCCTGATAATTTTGTCCCTAAAATACCACTTTCTGGAGGCAAGACTTATGAGCCTCATCGGTGTTGGGAGGATATTTTTGATGCAATCACCAATGCAAAACACTTAATATACATTACTGGTTGGTCTGTGTATACGGAGATTTCGTTGATAAGGGATTCTAGGAGGCCAAAGCCCGGGGGTGACATAACACTTGGCGAGCTTCTCAAGAAAAAAGCTAGTGAAGGCATCAGGGTTCTGATGCTTGTTTGGGATGACAGAACATCAGTCAATTTGTTGAAAAAAGATGGACTAATGGCTACTCATGACGAAGAAACCGAGCAGTTCTTCCATGGCACCGATGTGCATTGTGTCTTGTGCCCACGCAATCCCGATGATGGTGGTAGCATTGTTCAGGATTTAGAAATCTCTACCATGTTTACTCATCATCAGAAGATTGTGGTGGTGGATAGTGAGTTGCCTAATGGAGGGTCAGATAAGCGAAGAATTGTGAGTTTTGTTGGGGGTATTGACCTATGTGATGGAAGATATGATACAGCCTTCCACTCACTTTTCCGAACCCTTGACACGGCACACCATGATGATTTCCATCAACCTAACTTTCCTGGCGCTGATATAAAAAAAGGTGGTCCGAGGGAACCATGGCATGATATCCACTCCCGGCTCGAAGGACCAATAGCTTGGGATGTTTTGTTTAACTTCGAGCAGAGATGGCGGAAGCAAGGTGGGAAGGATATACTCGTTTCGCTGAGAGAGCTCGAAGATATCATTATTCCCCCATCCCCGGTGACATTTCCCGAGGATCATGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGTGCTGCTTTTGGTTTCCCGGAGACTCCTGAAGATGCTGCCAAAGCCGGATTGGTTAGTGGGAAGGATAATATCATTGATCGCAGTATTCAAGATGGTTATATTAATGCTATTCGGCGTGCAAAGAACTTCATCTATATCGAAAATCAGTATTTCCTCGGAAGCTCCTTTGCCTGGGCTGCTGATGATATTAAGCCTGAAGACATCGGTGCTTTGCATCTAATCCCGAAGGAACTTTCACTTAAGATTGTTAGTAAGATTGAAGCCGGGGAAAGGTTCACTGTGTATGTTGTCGTCCCAATGTGGCCAGAGGGTGTTCCAGAAAGTGGATCAGTTCAGGCAATATTGGACTGGCAAAGGAGAACACTAGAGATGATGTACAAGGATGTTGTTCAAGCACTCAAGGCTAAGGGAAGTGAGGAAGATCCTAGGAACTATTTGACATTCTTCTGCCTTGGAAATCGTGAAGTGGAGAAACAGGGTGAGTATGAGCCTTCAGAAAAACCCGAAGAGGATTCAGATTATCATAGAGCCCAAGAGGCGCGACGCTTCATGATTTATGTCCATGCCAAGATGATGATAGTTGATGATGAATACATAATTATTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCTAGGGACTCTGAGATTGCCATGGGCGCATATCAGCCATTTCATTTGGCTGCTAGGCAGCCGGCACGCGGTCAAATCCACGGTTTCCGTATGTCGTTGTGGTATGAGCACCTTGGCATGCTTCACGAGTCCTTCGACCATCCCGAAAGTGAAGAATGTATTAGTAAGGTGAACCAGATTGCTGAAAAGTACTGGGATCTCTATTCTAGTGAGTCACTTGAGCATGACCTTCCCGGCCACCTGCTCCGCTATCCTATCGGGGTTGCCAGTGAAGGTGATATTACAGAACTGCCGGGATTCGAGTTCTTTCCTGACACCAAGGCTCGCATTCTCGGAGGCAAAGTTGACTACTTGCCACCAATCCTTACCACTTAG 2439 0.4449 MAQILLHGNLHATIFEVDKLKDGGGGGGGGNFLSKIIENIGDKVGIGKGDTKLYATIDLEKARVGRTRIIENEENNPKWYESFHIYCGHLASNIIFTVKNDNPIGATLIGRGYVPVEDVLDGEEIDRWVELLDKDKNPIQEGSKIHVKLQYFDIAKDRNWDRGIRSAKFPGVPYTFFTQRQGCKVTLYQDAHVPDNFVPKIPLSGGKTYEPHRCWEDIFDAITNAKHLIYITGWSVYTEISLIRDSRRPKPGGDITLGELLKKKASEGIRVLMLVWDDRTSVNLLKKDGLMATHDEETEQFFHGTDVHCVLCPRNPDDGGSIVQDLEISTMFTHHQKIVVVDSELPNGGSDKRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGADIKKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDILVSLRELEDIIIPPSPVTFPEDHETWNVQLFRSIDGGAAFGFPETPEDAAKAGLVSGKDNIIDRSIQDGYINAIRRAKNFIYIENQYFLGSSFAWAADDIKPEDIGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESGSVQAILDWQRRTLEMMYKDVVQALKAKGSEEDPRNYLTFFCLGNREVEKQGEYEPSEKPEEDSDYHRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPFHLAARQPARGQIHGFRMSLWYEHLGMLHESFDHPESEECISKVNQIAEKYWDLYSSESLEHDLPGHLLRYPIGVASEGDITELPGFEFFPDTKARILGGKVDYLPPILTT 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1258 812 ProSiteProfiles C2 domain profile. 1 129 IPR000008 -
Lal1g1258 812 PIRSF PLD_plant 1 812 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lal1g1258 812 Gene3D C2 domain 8 162 IPR035892 -
Lal1g1258 812 Pfam Phospholipase D Active site motif 330 368 IPR001736 GO:0003824
Lal1g1258 812 Pfam Phospholipase D Active site motif 659 685 IPR001736 GO:0003824
Lal1g1258 812 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 330 368 IPR001736 GO:0003824
Lal1g1258 812 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 658 685 IPR001736 GO:0003824
Lal1g1258 812 SUPERFAMILY Phospholipase D/nuclease 453 742 - -
Lal1g1258 812 Gene3D Endonuclease Chain A 480 701 - -
Lal1g1258 812 PANTHER PHOSPHOLIPASE D ALPHA 1 2 812 - -
Lal1g1258 812 Gene3D Endonuclease Chain A 204 446 - -
Lal1g1258 812 PANTHER PHOSPHOLIPASE D 2 812 IPR015679 -
Lal1g1258 812 CDD C2_plant_PLD 2 152 - -
Lal1g1258 812 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 44 154 IPR035892 -
Lal1g1258 812 SMART pld_4 658 685 IPR001736 GO:0003824
Lal1g1258 812 SMART pld_4 330 368 IPR001736 GO:0003824
Lal1g1258 812 CDD PLDc_pPLDalpha_2 496 705 - -
Lal1g1258 812 Pfam C2 domain 43 131 IPR000008 -
Lal1g1258 812 Pfam Phospholipase D C terminal 731 801 IPR024632 -
Lal1g1258 812 SUPERFAMILY Phospholipase D/nuclease 156 445 - -
Lal1g1258 812 SMART C2_3c 9 128 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1258 Lal-Chr1 13840645 13844888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1258 1 812 Phospholipase D Gene Family (Wang group) AT3G15730 82.903 0.0 1427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1258 K01115 - gmx:100786410 1516.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1246 17 13482662 13486936 Lal1g1258 1 13840645 13844888 ECH
Lal1g1258 1 13840645 13844888 Lal1g1258 1 13840645 13844888 ECH
Lal20g1210 20 16604689 16608969 Lal1g1258 1 13840645 13844888 LSH
Lal1g1258 1 13840645 13844888 Lal18g0208 18 1730179 1734569 LSH
Lal25g0255 25 1742980 1746842 Lal1g1258 1 13840645 13844888 PCT
Lal1g1258 1 13840645 13844888 Lal25g0255 25 1742980 1746842 PCT