Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1249 ATGGCTTTTTGGTTGTGTTTTGGAAATTCTGATCGCAAAAAACGGGGAAAAGCGCAAGCTACATGGCGGGTGTTTTCTTTGAAGGAATTACACTCTGCCACAAATAACTTCAACTATGATAACAAGCTTGGAGAAGGCGGCTTCGGCAGCGTGTACTGGGGCCAACTTTGGGATGGATCACAAATTGCAGTGAAAAGATTGAAAGCTTGGAGTAACAAAGCAGATATGGAATTTGGCGTCGAAGTTGAAATATTGGCAAGAGTGCGACACAAAAATCTTCTAAGTCTGCGTGGCTATTGTGCCGAAGGACAGGAACGATTAATTGTATATGACTATATGCCAAATTTGAGCCTGCAATCTCATCTTCATGGACAGCACGCAGCCGAATGCCTTCTCGACTGGAATCGACGGATGAATATTGCAATCGGGTCTGCTGAGGGAATTGTGTATCTTCACCACCAAACAACACCGCATATCATCCACAGAGATATTAAGGGAAGCAATGTATTGCTGGATTCAGATTTCCAGGCCCACGTTGCTGATTTCGGTTTCGCTAAGCTGATCCCTGACGGGGCAACACATGTGACTACAAAAGTTAAGGGCACTCTTGGCTACCTTGCACCCGAATATGCGATGTTAGGTAAAGCAAACGAGAGTTGTGATGTGTTTAGTTTTGGCATTCTCCTTCTAGAACTTGCCTGTGGCCGAAAACCAATCGAAAAGGTTAGTTCCACGGTGAAGCGATCAATAGTTGATTGGGCATTGCCACTGGTTTGCGAGAAGAAATTTAGCGAACTTGTTGATTCAAAACTAAATGGTGAATATGTGGAAGAAGAGCTTAAAAGAGTTGTTTTTGTTGCAATGATATGTGCTCAAACTCAACCTGAGAAAAGACCTACCATGCTTGATGTGGTAGAGTTATTGAAGGGAGAATCTAAAGAGAAACTTTCTCAGATAGAGAATAGTGAAATGTTCAGAAACACTCTTGTTGCAGAATACAATGATGGTGCATCAATGGCTGAAGATAGTTCAGATTTCATCTCAGCAGAAAAAGAATACAAACATGACTTGGAAGAGAATACTAACGATACCGACATTAAATGA 1104 0.4203 MAFWLCFGNSDRKKRGKAQATWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKAWSNKADMEFGVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLQSHLHGQHAAECLLDWNRRMNIAIGSAEGIVYLHHQTTPHIIHRDIKGSNVLLDSDFQAHVADFGFAKLIPDGATHVTTKVKGTLGYLAPEYAMLGKANESCDVFSFGILLLELACGRKPIEKVSSTVKRSIVDWALPLVCEKKFSELVDSKLNGEYVEEELKRVVFVAMICAQTQPEKRPTMLDVVELLKGESKEKLSQIENSEMFRNTLVAEYNDGASMAEDSSDFISAEKEYKHDLEENTNDTDIK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1249 367 Gene3D Transferase(Phosphotransferase) domain 1 113 327 - -
Lal1g1249 367 PANTHER OS01G0750732 PROTEIN 4 362 - -
Lal1g1249 367 PIRSF ILK 7 328 - -
Lal1g1249 367 ProSitePatterns Protein kinases ATP-binding region signature. 43 65 IPR017441 GO:0005524
Lal1g1249 367 PANTHER BNAA05G14800D PROTEIN 4 362 - -
Lal1g1249 367 ProSiteProfiles Protein kinase domain profile. 37 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1249 367 SUPERFAMILY Protein kinase-like (PK-like) 20 308 IPR011009 -
Lal1g1249 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Lal1g1249 367 Gene3D Phosphorylase Kinase; domain 1 7 112 - -
Lal1g1249 367 SMART serkin_6 37 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1249 367 Pfam Protein kinase domain 38 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1249 Lal-Chr1 13763718 13769434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1249 25 311 Trihelix Transcription Factor Family AT1G70460 50.859 1.38e-95 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Lal1g1249 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1249 - - zju:107407638 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1249 1 13763718 13769434 Lal1g1249 1 13763718 13769434 ECH
Lal20g1221 20 16693009 16698686 Lal1g1249 1 13763718 13769434 LSH
Lal8g0204 8 1373865 1379944 Lal1g1249 1 13763718 13769434 PCT
Lal1g1249 1 13763718 13769434 Lal8g0204 8 1373865 1379944 PCT