Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1232 ATGGAGGAGTCAGGGCAAAATTGGCCTTCTTATTCTGATTTGGGTGTAGGTGATTTGAGTTTTGATGATGAAGAAGTAGAGAGTGATTCATTTGAAGAAAGCATAGATCCAATGATGTTGAATGAGACAAAGAAAAATAAGAGAGAAATGGAACTCAATGAGAGGTTGCTTGCACTTTCAGCTACCATCCCTGGCTTGAAAAAGAAAAAGATGGACAAAACTTCAATCCTAGACAAAGCAAGCAACTATGTGAAACAACTTCAACAACATGTAAGAGAGTTAGAACAACAAGTTGGATCCCAAAGTTGTAAGAACAATGAAACCTCTTCATGCATTGAAGTGAATTCTGATTATTATGGTGAACCAAATGATGATAATATTCTTCTTCCTGAAGTCAAAGTAAGAGTGTTACATAAAGAAGTACTTATCATAATCCATTGTGAGAAACAAAAAAGCATTATGCTTAAAATATTATCACATCTTGAAAATCTTCATCTCTCAATGCTCAATAACAGTGTCTTGCCTTTTGGGAAATCTACTCTTGACATTACCATTATTACTCAGATGGGTGATGGATACATAATGACAACAGATGAACTTGTGAATAGTCTGAGACTATTGATCATAACACAATAG 636 0.3459 MEESGQNWPSYSDLGVGDLSFDDEEVESDSFEESIDPMMLNETKKNKREMELNERLLALSATIPGLKKKKMDKTSILDKASNYVKQLQQHVRELEQQVGSQSCKNNETSSCIEVNSDYYGEPNDDNILLPEVKVRVLHKEVLIIIHCEKQKSIMLKILSHLENLHLSMLNNSVLPFGKSTLDITIITQMGDGYIMTTDELVNSLRLLIITQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1232 211 Pfam Helix-loop-helix DNA-binding domain 50 88 IPR011598 GO:0046983
Lal1g1232 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 87 IPR011598 GO:0046983
Lal1g1232 211 PANTHER PROTEIN, PUTATIVE-RELATED 45 210 - -
Lal1g1232 211 PANTHER BHLH TRANSCRIPTION FACTOR 45 210 - -
Lal1g1232 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 116 IPR036638 GO:0046983
Lal1g1232 211 Coils Coil 77 104 - -
Lal1g1232 211 MobiDBLite consensus disorder prediction 18 32 - -
Lal1g1232 211 Gene3D - 39 104 IPR036638 GO:0046983
Lal1g1232 211 MobiDBLite consensus disorder prediction 1 34 - -
Lal1g1232 211 SMART finulus 46 93 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1232 Lal-Chr1 13633492 13639665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1232 36 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 35.025 1.43e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal1g1232 HLH 4.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1232 - - aip:107616596 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1232 1 13633492 13639665 Lal18g0225 18 1866322 1869335 LSH
Lal1g1232 1 13633492 13639665 Lal8g0192 8 1283274 1296153 PCT