Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1221 ATGGAAGATCAAAAACAATCAAATGATTCAACTCATCATCTTGTACTTGATCTAAGCCTATCGAGCAAGGATGAATCAAAGCCAGAACTCAACTTTCTCGATTCTTTCCATACAAATTTGTCTCAAAACCACTCAGAAGCTAGTAGTGATTGTAATGAAATGGAGCCAAGGACTTTTTCATGCAACTATTGTCAAAGAAAGTTTTATAGTTCACAAGCACTTGGAGGACACCAAAACGCGCATAAGCGCGAAAGAACCTTGGTAAGAAGAGGATTCAAAACTGATGCTGCTGCAATTTCAGTAGATTTTGGACACAGGTACTCTAGCATGGCTTCTCTGCCTTCACATGGCTTGTATAATAGGTCACTTGGAATTCAGCTGCATTCTATGATCCACAAACCTTATAATCAAATACCCGTTTTCGGGTGGAAAAAGCCGATTTTGGATTCGCAGCCAGCAATTGTGAAGTTTACATCTGGAAAATTTCATGTTGGAGCAGAAACTGAATCATCTTTGGTTGGTGGCATTCCAAGGCTAGGTAAGTTTTCTAATAGGGTGGTGACTGAGGGATTTGGAGGTTCATTTGGCAGCATTAGCCATTTAAAGTCTAAACAAGAGAAGCTGCAACAAAAACTTGACCTATCCCTTAAGCTCTAA 657 0.3973 MEDQKQSNDSTHHLVLDLSLSSKDESKPELNFLDSFHTNLSQNHSEASSDCNEMEPRTFSCNYCQRKFYSSQALGGHQNAHKRERTLVRRGFKTDAAAISVDFGHRYSSMASLPSHGLYNRSLGIQLHSMIHKPYNQIPVFGWKKPILDSQPAIVKFTSGKFHVGAETESSLVGGIPRLGKFSNRVVTEGFGGSFGSISHLKSKQEKLQQKLDLSLKL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1221 218 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Lal1g1221 218 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 218 IPR044246 GO:0009788
Lal1g1221 218 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 218 - -
Lal1g1221 218 SUPERFAMILY beta-beta-alpha zinc fingers 56 86 IPR036236 -
Lal1g1221 218 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Lal1g1221 218 Gene3D Classic Zinc Finger 35 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1221 Lal-Chr1 13468103 13468759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1221 2 218 C2H2 Transcription Factor Family AT5G10970 42.194 3.63e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal1g1221 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1221 - - gmx:100816861 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1221 1 13468103 13468759 Lal1g1221 1 13468103 13468759 ECH
Lal20g1244 20 16956512 16957174 Lal1g1221 1 13468103 13468759 LSH