Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1220 ATGCAAGAGAATGAAGAAATCCCATCAGTGCCTTCAATACCAGCCACACCAGGAACTCTAGGTGCTCCTCTTTTTGGTGGGTTCAAGTTTGAGAGAAATCATAATAATAATGGTATTGCTAGGAACTCCCTCCTTAATGGTTGTAAATGTTTCGATAGTGTTCAAGATTGGACCTTAGAAGATGGTGCATTACCTAAACTCTCTTGCTCTTTGCTTCCTCCTCCTATCTCTCTTGCAAGAAAGGTAGGAGCTGAGTTTATAGGAACATTCATAGTCATGTTTGCTGGAACAGCAGCTGCTATAGTGAATGAAAAGACAAATGGGTCAGAGAGTCTAATGGGATGTGCTGCAACTACTGGCCTTGCTGTTATGGTCATAATCTTCTCCACTGCTCACATTTCTGGTGCTCATCTCAACCCTGCTGTTACCATTTCTTTTGCTGCTTTCAACCACTTCCCTTGGAAATATGTGGCTATGTATATTGGTGCACAAGTATTGGCATCTATATGTGCAGCATTTGCACTGAAATGGATATATAATCCCTTCATGAGTGGTGGAGTCACAGTTTGTAAAGTTGGATATGGCCAAGCTTTTGCATTAGAGTTCATTATCACCTTTAATCTCATGTTCGTTGTTACTGCAGTTGCCACCGACACTAGAGTAGTTGGAGAGCTTGCGGGAATCGCGGTGGGGGCCACTGTGATGCTCAATATACTCATTGCTGGGCCAGCAACAGGGGGTTCAATGAACCCAGTAAGAACACTTGGCCCAGCAATTGCCACAAAGAACTACAAAGCCATATGGATTTATCTCATAGCTCCCATTCTTGGTGCTCTTGGTGGGACACTTGCATATACTGCAGTCAAGCTTCAAGATGAACATGAAAACCCTAATGCAAAAGTCCCTTCAAATCCTAGAAGCTTTAGAAGGTAA 933 0.4298 MQENEEIPSVPSIPATPGTLGAPLFGGFKFERNHNNNGIARNSLLNGCKCFDSVQDWTLEDGALPKLSCSLLPPPISLARKVGAEFIGTFIVMFAGTAAAIVNEKTNGSESLMGCAATTGLAVMVIIFSTAHISGAHLNPAVTISFAAFNHFPWKYVAMYIGAQVLASICAAFALKWIYNPFMSGGVTVCKVGYGQAFALEFIITFNLMFVVTAVATDTRVVGELAGIAVGATVMLNILIAGPATGGSMNPVRTLGPAIATKNYKAIWIYLIAPILGALGGTLAYTAVKLQDEHENPNAKVPSNPRSFRR 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1220 310 ProSitePatterns MIP family signature. 137 145 IPR022357 -
Lal1g1220 310 PRINTS Major intrinsic protein family signature 80 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g1220 310 PRINTS Major intrinsic protein family signature 119 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g1220 310 PRINTS Major intrinsic protein family signature 156 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g1220 310 PRINTS Major intrinsic protein family signature 200 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g1220 310 PRINTS Major intrinsic protein family signature 231 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g1220 310 PRINTS Major intrinsic protein family signature 268 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g1220 310 CDD MIP 80 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g1220 310 SUPERFAMILY Aquaporin-like 77 297 IPR023271 -
Lal1g1220 310 PANTHER BNAA02G36290D PROTEIN 4 298 - -
Lal1g1220 310 PANTHER AQUAPORIN NIP2-1 4 298 IPR034294 -
Lal1g1220 310 Pfam Major intrinsic protein 78 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g1220 310 Gene3D Glycerol uptake facilitator protein. 74 301 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1220 Lal-Chr1 13451958 13460951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1220 3 310 Major Intrinsic Protein MIP AT1G80760 69.579 1.42e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1220 K09874 - qsu:112009900 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1246 20 16980232 16985575 Lal1g1220 1 13451958 13460951 LSH