Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1217 ATGTCAGGTGATGAAGGTGTCGTTGCAGCTGAGCCAGCTGCTGCTCCGGCTTCTGTAATTCCCGGTGAGCCTATGGATATCCTGACTGCCTTACAGCTTGTGCTCAGAAAATCATTGGCTTATGGTGGTCTTGCCCGAGGCCTTCATGAAGCTGCAAAAGTGATCGAGAAGCACGCTGCACAACTCTGTGTTCTTGCAGAAGATTGTGACCAACCTGACTATGTGAAACTTGTCAAGGCCCTTTGTGCTGAGCACAATGTTAGCCTTTTGACAGTTCCAAGTGCAAAGACCCTCGGAGAGTGGGCCGGTTTGTGCAAGATTGATTCCGAGGGAAAAGCTCGGAAAGTAACCGGCTGCTCATGTGTGGTTGTTAAGGATTTCGGGGAAGAACACGAAGCCTACAATGTTGTTCTGCAACATGTCAAGTCTAACTGA 435 0.492 MSGDEGVVAAEPAAAPASVIPGEPMDILTALQLVLRKSLAYGGLARGLHEAAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1217 144 SUPERFAMILY L30e-like 24 142 IPR029064 -
Lal1g1217 144 PRINTS Ribosomal protein S12E family signature 34 47 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal1g1217 144 PRINTS Ribosomal protein S12E family signature 48 64 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal1g1217 144 PRINTS Ribosomal protein S12E family signature 89 110 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal1g1217 144 PRINTS Ribosomal protein S12E family signature 114 127 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal1g1217 144 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 30 123 IPR004038 -
Lal1g1217 144 Gene3D - 12 144 IPR029064 -
Lal1g1217 144 PANTHER 40S RIBOSOMAL PROTEIN S12 1 144 - -
Lal1g1217 144 PANTHER 40S RIBOSOMAL PROTEIN S12 1 144 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal1g1217 144 ProSitePatterns Ribosomal protein S12e signature. 30 48 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1217 Lal-Chr1 13418710 13421110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1217 1 144 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 68.750 1.74e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1217 K02951 - gmx:100786733 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1217 1 13418710 13421110 Lal1g1217 1 13418710 13421110 ECH
Lal20g1249 20 17009934 17013233 Lal1g1217 1 13418710 13421110 LSH
Lal1g1217 1 13418710 13421110 Lal18g0043 18 314818 317270 LSH