Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal1g1212 | ATGGGGATATACCTTAGCACCCCGAAAACAGAGAAAGCTTCTGAAGATGGTGAGAATGACAAACTTCGATTCGGCTTGTCTTCCATGCAGGGATGGCGTGCTTCCATGGAAGATGCTCATGCAGCTCATCCATATTTGGACAACTCTACATCTTTCTTTGGTGTTTTTGATGGCCATGGAGGCAAAGGAGTTTCGAAATTCTGTGCCAAGTATCTACACCAGCAAGTGCTTAAGCATGAAGCTTACGTAGCGGGAGATCTTGGCACATCTTTACAGAAATCTTTCCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGGTGGAGAGAATTAGCAGCCTTGGGAGATAAAATCGAAAAGTTGTCTGGCATACTAGAGGGCTTTATATGGTCTCCCAAGGGTGGCGAAGCCAATGACCATGTTGATGATTGGGCTTTTGAGGAGGGACCCCATTCTGATTTTAGTGGACCAAACTGTGGAAGCACAGCCTGTGTGGCTGTCATTCGAGGAAATAAACTTGTTGTTGCAAATGCTGGTGATTCTAGATGTGTATTGTCAAGGAAGGGCCAGGCACATAATATGTCAAAAGATCACAAGCCTGACCTTGTGGCTGAGAAAGACAGGATTCTAAAAGCTGGTGGATTCATCCAAGTTGGACGGGTCAATGGATGTTTAAACTTGGCTAGAGCAATTGGGGACATGGAATTCAAACAGAACAAGTTTCTTCCTGTTGAAAAGCAGATTGTGACTGCAGATCCAGACATAACTTCTATTGAGCTTTGCGATGTTGATGAGTTTCTTGTACTAGCTTGTGATGGGATATGGGATTGCATGTCAAGCCAACAGCTTGTGGATTTTATACATGGACAGTTAAAAACAGAGAATAAACTTTCTGCAGTCTGTGAGAAAGTATTTGATAGGTGCTTGGCACCAACAGCTGGCGGTGAGGGGTGTGATAACATGACCATGCTTTTGATTCAGTTCAAGGATCCTTCAAATCCCAGTGCTCCTGTCACAAACCAGCCTCAGTCATCTGCCGAAACGTCTGAAGCTGATAAGGGTGCAGAGAAAGCAGAATAA | 1080 | 0.4444 | MGIYLSTPKTEKASEDGENDKLRFGLSSMQGWRASMEDAHAAHPYLDNSTSFFGVFDGHGGKGVSKFCAKYLHQQVLKHEAYVAGDLGTSLQKSFLRMDEMMRGQRGWRELAALGDKIEKLSGILEGFIWSPKGGEANDHVDDWAFEEGPHSDFSGPNCGSTACVAVIRGNKLVVANAGDSRCVLSRKGQAHNMSKDHKPDLVAEKDRILKAGGFIQVGRVNGCLNLARAIGDMEFKQNKFLPVEKQIVTADPDITSIELCDVDEFLVLACDGIWDCMSSQQLVDFIHGQLKTENKLSAVCEKVFDRCLAPTAGGEGCDNMTMLLIQFKDPSNPSAPVTNQPQSSAETSEADKGAEKAE | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal1g1212 | 359 | Pfam | Protein phosphatase 2C | 23 | 104 | IPR001932 | - | |
| Lal1g1212 | 359 | Pfam | Protein phosphatase 2C | 155 | 313 | IPR001932 | - | |
| Lal1g1212 | 359 | SUPERFAMILY | PP2C-like | 3 | 331 | IPR036457 | - | |
| Lal1g1212 | 359 | PANTHER | PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED | 1 | 340 | - | - | |
| Lal1g1212 | 359 | SMART | PP2C_4 | 13 | 326 | IPR001932 | - | |
| Lal1g1212 | 359 | MobiDBLite | consensus disorder prediction | 329 | 349 | - | - | |
| Lal1g1212 | 359 | ProSitePatterns | PPM-type phosphatase domain signature. | 52 | 60 | IPR000222 | GO:0043169 | |
| Lal1g1212 | 359 | MobiDBLite | consensus disorder prediction | 329 | 359 | - | - | |
| Lal1g1212 | 359 | CDD | PP2Cc | 23 | 328 | IPR001932 | - | |
| Lal1g1212 | 359 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 340 | IPR015655 | GO:0004722|GO:0006470 | |
| Lal1g1212 | 359 | Gene3D | - | 1 | 329 | IPR036457 | - | |
| Lal1g1212 | 359 | ProSiteProfiles | PPM-type phosphatase domain profile. | 23 | 328 | IPR001932 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal1g1212 | Lal-Chr1 | 13365731 | 13373095 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal1g1212 | 1 | 335 | PP2C-type Phosphatase Gene Family | AT2G25070 | 75.000 | 0.0 | 540 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal1g1212 | K17499 | - | gmx:100776787 | 659.833 |
Event-related genes