Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1184 ATGAGGCCCGTTCTTCCTCCACCCTCTTCCTCCCCTCTTGTTGGTGGTCCTAACCGTTCTCACCACCGCCGTCGCCAGGACCTCACCATACCTCTCCCTCAGCGTGACACAGCCCTCGCTGTCCCCCTCCCTCTCCCTCCCACCTCCGCCCCCTCCTCCGCCCCCACCACCCACCAGCCCATCCCTTTCTCCGAGCTTGACCGTCTCAACCGAATCGGAAGCGGCAGCGGCGGCACCGTCTATAAGGTCATCCACCGTCCCACCAACCGACTCTACGCTCTCAAGGTCATCTATGGCCACCATGAGGATTCCGTTCGCCGTCAGATCCACCGCGAGGTTCAGATCCTCCGTGATGTCGACGATGAGAACGTGGTGAGGTGCCATGACATGTACGATCACAACGCTGAGATTCAAGTTCTTCTTGAATTCATGGATGGAGGTTCACTCGAAGGTAAGCATATCCCTAACGAACAGAACCTCGCTGATCTCTCTCGTCAGATACTGAGTGGACTCGCTTATCTCCACCGCCGCTACATCGTCCACCGTGATATCAAACCATCGAACCTACTCATCAATTCAAGTAAGCAAGTGAAGATAGCTGACTTCGGAGTTGGTCGGATCTTGAATCAGACAATGGATCCATGCAATTCAGCAGTTGGAACAATTGCATACATGAGTCCAGAGAGGATCAACACTGACATCAATAATGGACAATATGATGCATATGCTGGTGATATATGGAGTTTTGGAGTTTCAATATTGGAATTTTATATGGGAAGGTTTCCATTTGCAGTTGGGAGACAAGGGGATTGGGCTAGCTTGATGTGTGCTATCTGTATGGCTGCACCTCCAGAGGCACCGGAGAGTGCTTCACCGGAGTTTCGTGATTTCATATCGAGGTGTTTGCAGAGGGAACCTCCTAAAAGGTGGAGTGCATCAAGGTTGTTGGGACATCCTTTTATTGCTAAGGGAATTCTCAACAATCATCCTCACATTCATAACAACCTTCATCACCTCAGGCCCCTTTCTTTTTAG 1035 0.5111 MRPVLPPPSSSPLVGGPNRSHHRRRQDLTIPLPQRDTALAVPLPLPPTSAPSSAPTTHQPIPFSELDRLNRIGSGSGGTVYKVIHRPTNRLYALKVIYGHHEDSVRRQIHREVQILRDVDDENVVRCHDMYDHNAEIQVLLEFMDGGSLEGKHIPNEQNLADLSRQILSGLAYLHRRYIVHRDIKPSNLLINSSKQVKIADFGVGRILNQTMDPCNSAVGTIAYMSPERINTDINNGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMAAPPEAPESASPEFRDFISRCLQREPPKRWSASRLLGHPFIAKGILNNHPHIHNNLHHLRPLSF 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1184 344 Gene3D Phosphorylase Kinase; domain 1 50 145 - -
Lal1g1184 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Lal1g1184 344 SUPERFAMILY Protein kinase-like (PK-like) 64 330 IPR011009 -
Lal1g1184 344 CDD PKc_MAPKK_plant_like 64 323 - -
Lal1g1184 344 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 20 330 - -
Lal1g1184 344 Gene3D Transferase(Phosphotransferase) domain 1 148 336 - -
Lal1g1184 344 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 20 330 - -
Lal1g1184 344 Pfam Protein kinase domain 68 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1184 344 ProSiteProfiles Protein kinase domain profile. 66 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1184 344 SMART serkin_6 66 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g1184 344 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Lal1g1184 344 MobiDBLite consensus disorder prediction 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1184 Lal-Chr1 13074780 13075814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1184 1 324 MAP Kinase Kinase Gene Family AT1G51660 69.795 2.94e-166 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lal1g1184 Pkinase 1e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1184 K13413 - gmx:100786390 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1276 20 17229322 17230371 Lal1g1184 1 13074780 13075814 LSH